DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass

Abstract

The native recalcitrance of plants hinders the biomass conversion process using current biorefinery techniques. Down-regulation of the caffeic acid O-methyltransferase (COMT) gene in the lignin biosynthesis pathway of switchgrass reduced the thermochemical and biochemical conversion recalcitrance of biomass. Due to potential environmental influences on lignin biosynthesis and deposition, studying the consequences of physicochemical changes in field-grown plants without pretreatment is essential to evaluate the performance of lignin-altered plants. We determined the chemical composition, cellulose crystallinity and the degree of its polymerization, molecular weight of hemicellulose, and cellulose accessibility of cell walls in order to better understand the fundamental features of why biomass is recalcitrant to conversion without pretreatment. Lastly, the most important is to investigate whether traits and features are stable in the dynamics of field environmental effects over multiple years.

Authors:
; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Joint Institute for Biological Sciences (JIBS); National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1618662
Alternate Identifier(s):
OSTI ID: 1339385; OSTI ID: 1340901
Report Number(s):
NREL/JA-5100-67649
Journal ID: ISSN 1754-6834; 12; PII: 695
Grant/Contract Number:  
AC05-00OR22725; AC36-08GO28308
Resource Type:
Published Article
Journal Name:
Biotechnology for Biofuels
Additional Journal Information:
Journal Name: Biotechnology for Biofuels Journal Volume: 10 Journal Issue: 1; Journal ID: ISSN 1754-6834
Publisher:
Springer Science + Business Media
Country of Publication:
Netherlands
Language:
English
Subject:
09 BIOMASS FUELS; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 59 BASIC BIOLOGICAL SCIENCES; Switchgrass; Caffeic acid O-methyltransferase; Biomass recalcitrance; Enzymatic hydrolysis; Lignin; Cellulose accessibility; switchgrass; caffeic acid; O-methyltransferase; biomass recalcitrance; enzymatic hydrolysis; lignin; cellulose accessibility

Citation Formats

Li, Mi, Pu, Yunqiao, Yoo, Chang Geun, Gjersing, Erica, Decker, Stephen R., Doeppke, Crissa, Shollenberger, Todd, Tschaplinski, Timothy J., Engle, Nancy L., Sykes, Robert W., Davis, Mark F., Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Dixon, Richard A., Wang, Zeng-Yu, Neal Stewart, Jr., C., and Ragauskas, Arthur J. Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass. Netherlands: N. p., 2017. Web. doi:10.1186/s13068-016-0695-7.
Li, Mi, Pu, Yunqiao, Yoo, Chang Geun, Gjersing, Erica, Decker, Stephen R., Doeppke, Crissa, Shollenberger, Todd, Tschaplinski, Timothy J., Engle, Nancy L., Sykes, Robert W., Davis, Mark F., Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Dixon, Richard A., Wang, Zeng-Yu, Neal Stewart, Jr., C., & Ragauskas, Arthur J. Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass. Netherlands. https://doi.org/10.1186/s13068-016-0695-7
Li, Mi, Pu, Yunqiao, Yoo, Chang Geun, Gjersing, Erica, Decker, Stephen R., Doeppke, Crissa, Shollenberger, Todd, Tschaplinski, Timothy J., Engle, Nancy L., Sykes, Robert W., Davis, Mark F., Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Dixon, Richard A., Wang, Zeng-Yu, Neal Stewart, Jr., C., and Ragauskas, Arthur J. Tue . "Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass". Netherlands. https://doi.org/10.1186/s13068-016-0695-7.
@article{osti_1618662,
title = {Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass},
author = {Li, Mi and Pu, Yunqiao and Yoo, Chang Geun and Gjersing, Erica and Decker, Stephen R. and Doeppke, Crissa and Shollenberger, Todd and Tschaplinski, Timothy J. and Engle, Nancy L. and Sykes, Robert W. and Davis, Mark F. and Baxter, Holly L. and Mazarei, Mitra and Fu, Chunxiang and Dixon, Richard A. and Wang, Zeng-Yu and Neal Stewart, Jr., C. and Ragauskas, Arthur J.},
abstractNote = {The native recalcitrance of plants hinders the biomass conversion process using current biorefinery techniques. Down-regulation of the caffeic acid O-methyltransferase (COMT) gene in the lignin biosynthesis pathway of switchgrass reduced the thermochemical and biochemical conversion recalcitrance of biomass. Due to potential environmental influences on lignin biosynthesis and deposition, studying the consequences of physicochemical changes in field-grown plants without pretreatment is essential to evaluate the performance of lignin-altered plants. We determined the chemical composition, cellulose crystallinity and the degree of its polymerization, molecular weight of hemicellulose, and cellulose accessibility of cell walls in order to better understand the fundamental features of why biomass is recalcitrant to conversion without pretreatment. Lastly, the most important is to investigate whether traits and features are stable in the dynamics of field environmental effects over multiple years.},
doi = {10.1186/s13068-016-0695-7},
journal = {Biotechnology for Biofuels},
number = 1,
volume = 10,
place = {Netherlands},
year = {Tue Jan 03 00:00:00 EST 2017},
month = {Tue Jan 03 00:00:00 EST 2017}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1186/s13068-016-0695-7

Citation Metrics:
Cited by: 22 works
Citation information provided by
Web of Science

Figures / Tables:

Fig. 1 Fig. 1: Chemical composition of field‑grown switchgrass in years 2 and 3. The values (wt% of cell wall residue) reported are the average of 5 biological replicates from each control group and 10 biological replicates from each transgenic group (a). Error bars represent standard errors. Mannan was not detectable. Anmore » asterisk (*) indicates a significant difference between the transgenic and control groups as determined by a Student’s t test (P < 0.05). The distributions of lignin (b), xylan (c), and galactan (d) contents in switchgrass were compared. & The lignin content data of year 2 and year 3 plants are from previous publications [18, 19]« less

Save / Share:

Works referenced in this record:

Substrate and Enzyme Characteristics that Limit Cellulose Hydrolysis
journal, October 1999

  • Mansfield, S. D.; Mooney, C.; Saddler, J. N.
  • Biotechnology Progress, Vol. 15, Issue 5
  • DOI: 10.1021/bp9900864

Chemical transformations of Populus trichocarpa during dilute acid pretreatment
journal, January 2012

  • Cao, Shilin; Pu, Yunqiao; Studer, Michael
  • RSC Advances, Vol. 2, Issue 29
  • DOI: 10.1039/c2ra22045h

Structure-Function Analyses of a Caffeic Acid O -Methyltransferase from Perennial Ryegrass Reveal the Molecular Basis for Substrate Preference
journal, December 2010


Two-year field analysis of reduced recalcitrance transgenic switchgrass
journal, April 2014

  • Baxter, Holly L.; Mazarei, Mitra; Labbe, Nicole
  • Plant Biotechnology Journal, Vol. 12, Issue 7
  • DOI: 10.1111/pbi.12195

Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments
journal, January 2013


Biosolutions to the energy problem
journal, January 2009


A staining technique for evaluating the pore structure variations of microcrystalline cellulose powders
journal, August 1998


Lignin content in natural Populus variants affects sugar release
journal, March 2011

  • Studer, M. H.; DeMartini, J. D.; Davis, M. F.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 15, p. 6300-6305
  • DOI: 10.1073/pnas.1009252108

Do Enzymatic Hydrolyzability and Simons' Stain Reflect the Changes in the Accessibility of Lignocellulosic Substrates to Cellulase Enzymes?
journal, December 2001

  • Esteghlalian, A. R.; Bilodeau, M.; Mansfield, S. D.
  • Biotechnology Progress, Vol. 17, Issue 6
  • DOI: 10.1021/bp0101177

Switchgrass as an energy crop for biofuel production: A review of its ligno-cellulosic chemical properties
journal, January 2010

  • David, Kasi; Ragauskas, Arthur J.
  • Energy & Environmental Science, Vol. 3, Issue 9
  • DOI: 10.1039/b926617h

Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass
journal, February 2011

  • Fu, Chunxiang; Mielenz, Jonathan R.; Xiao, Xirong
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 9, p. 3803-3808
  • DOI: 10.1073/pnas.1100310108

Lignin modification improves fermentable sugar yields for biofuel production
journal, June 2007

  • Chen, Fang; Dixon, Richard A.
  • Nature Biotechnology, Vol. 25, Issue 7, p. 759-761
  • DOI: 10.1038/nbt1316

Time Course Field Analysis of COMT-Downregulated Switchgrass: Lignification, Recalcitrance, and Rust Susceptibility
journal, May 2016


Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates
journal, June 2009


Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants
journal, April 2010

  • Moura, Jullyana Cristina Magalhães Silva; Bonine, Cesar Augusto Valencise; de Oliveira Fernandes Viana, Juliana
  • Journal of Integrative Plant Biology, Vol. 52, Issue 4
  • DOI: 10.1111/j.1744-7909.2010.00892.x

Impact of Reduced Lignin on Plant Fitness
journal, January 2005


Features of promising technologies for pretreatment of lignocellulosic biomass
journal, April 2005


Use of the Simons' Staining Technique to Assess Cellulose Accessibility in Pretreated Substrates
journal, August 2012

  • Chandra, Richard P.; Saddler, Jack N.
  • Industrial Biotechnology, Vol. 8, Issue 4
  • DOI: 10.1089/ind.2012.0016

Biomass recalcitrance. Part I: the chemical compositions and physical structures affecting the enzymatic hydrolysis of lignocellulose
journal, March 2012

  • Zhao, Xuebing; Zhang, Lihua; Liu, Dehua
  • Biofuels, Bioproducts and Biorefining, Vol. 6, Issue 4
  • DOI: 10.1002/bbb.1331

ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification
journal, April 2010

  • Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W.
  • Industrial Biotechnology, Vol. 6, Issue 2
  • DOI: 10.1089/ind.2010.0009

Development of an acetylation reaction of switchgrass hemicellulose in ionic liquid without catalyst
journal, January 2013


Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
journal, February 2007

  • Himmel, M. E.; Ding, S.-Y.; Johnson, D. K.
  • Science, Vol. 315, Issue 5813, p. 804-807
  • DOI: 10.1126/science.1137016

An Overview of Factors Influencing the Enzymatic Hydrolysis of Lignocellulosic Feedstocks
book, October 2000

  • Esteghlalian, Ali R.; Srivastava, Vinit; Gilkes, Neil
  • Glycosyl Hydrolases for Biomass Conversion
  • DOI: 10.1021/bk-2001-0769.ch006

Cellulose crystallinity - a key predictor of the enzymatic hydrolysis rate: Cellulose crystallinity
journal, February 2010


The Path Forward for Biofuels and Biomaterials
journal, January 2006

  • Ragauskas, Arthur J.; Williams, Charlotte K.; Davison, Brian H.
  • Science, Vol. 311, Issue 5760, p. 484-489
  • DOI: 10.1126/science.1114736

Net energy of cellulosic ethanol from switchgrass
journal, January 2008

  • Schmer, M. R.; Vogel, K. P.; Mitchell, R. B.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 2
  • DOI: 10.1073/pnas.0704767105

Cellulose Isolation Methodology for NMR Analysis of Cellulose Ultrastructure
journal, November 2011

  • Foston, Marcus B.; Hubbell, Chistopher A.; Ragauskas, Art J.
  • Materials, Vol. 4, Issue 11
  • DOI: 10.3390/ma4111985

Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure
journal, February 2016

  • Dumitrache, Alexandru; Akinosho, Hannah; Rodriguez, Miguel
  • Biotechnology for Biofuels, Vol. 9, Issue 1
  • DOI: 10.1186/s13068-016-0445-x

Comparison of laboratory delignification methods, their selectivity, and impacts on physiochemical characteristics of cellulosic biomass
journal, February 2013


Overview and Evaluation of Fuel Ethanol from Cellulosic Biomass: Technology, Economics, the Environment, and Policy
journal, November 1996


Comparative study on enzymatic digestibility of switchgrass varieties and harvests processed by leading pretreatment technologies
journal, December 2011


The effect of non-structural components and lignin on hemicellulose extraction
journal, August 2016


Determination of porosity of lignocellulosic biomass before and after pretreatment by using Simons’ stain and NMR techniques
journal, September 2013


An In-Depth Understanding of Biomass Recalcitrance Using Natural Poplar Variants as the Feedstock
journal, December 2016


Works referencing / citing this record:

Downregulation of pectin biosynthesis gene GAUT4 leads to reduced ferulate and lignin-carbohydrate cross-linking in switchgrass
journal, January 2019


Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus
journal, September 2019

  • Zhang, Jin; Xie, Meng; Li, Mi
  • Plant Biotechnology Journal, Vol. 18, Issue 3
  • DOI: 10.1111/pbi.13254

The effect of liquid hot water pretreatment on the chemical–structural alteration and the reduced recalcitrance in poplar
journal, November 2017


Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.