Search Menu
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information
Search Scholarly Publications

Title: High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

Abstract

Desulfovibrio carbinoliphilus subsp. oakridgensis FW-101-2B is an anaerobic, organic acid/alcohol-oxidizing, sulfate-reducing δ-proteobacterium. FW-101-2B was isolated from contaminated groundwater at The Field Research Center at Oak Ridge National Lab after in situ stimulation for heavy metal-reducing conditions. The genome will help elucidate the metabolic potential of sulfate-reducing bacteria during uranium reduction.

Authors:
 [1];  [1]; ORCiD logo [2];  [3];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4] more »;  [4];  [4];  [4];  [5];  [5];  [5];  [6];  [6];  [5];  [7]; ORCiD logo [8] « less
+ Show Author Affiliations
  1. Montana State Univ., Bozeman, MT (United States)
  2. Univ. of Tennessee, Knoxville, TN (United States)
  3. Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
  4. Dept. of Energy Joint Genome Inst., Walnut Creek, CA (United States)
  5. Lawrence Berkeley National Lab., Berkeley, California (United States)
  6. Stanford Univ., CA (United States)
  7. Univ. of Tennessee, Knoxville, TN (United States); Lawrence Berkeley National Lab., Berkeley, California (United States)
  8. Montana State Univ., Bozeman, MT (United States); Lawrence Berkeley National Lab., Berkeley, California (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1214940
Alternate Identifier(s):
OSTI ID: 1265391; OSTI ID: 1619068
Grant/Contract Number:  
AC05-00OR22725; AC02-05CH11231; AC52- 07NA27344; AC02-06NA25396
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 3; Journal Issue: 2; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Loanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., and Fields, Matthew W. High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater. United States: N. p., 2015. Web. doi:10.1128/genomeA.00092-15.
Copy to clipboard
Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Loanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., & Fields, Matthew W. High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater. United States. https://doi.org/10.1128/genomeA.00092-15
Copy to clipboard
Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Loanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., and Fields, Matthew W. Thu . "High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater". United States. https://doi.org/10.1128/genomeA.00092-15. https://www.osti.gov/servlets/purl/1214940.
Copy to clipboard
@article{osti_1214940,
title = {High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater},
author = {Ramsay, Bradley D. and Hwang, Chiachi and Woo, Hannah L. and Carroll, Sue L. and Lucas, Susan and Han, James and Lapidus, Alla L. and Cheng, Jan-Fang and Goodwin, Lynne A. and Pitluck, Samuel and Peters, Lin and Chertkov, Olga and Held, Brittany and Detter, John C. and Han, Cliff S. and Tapia, Roxanne and Land, Miriam L. and Hauser, Loren J. and Kyrpides, Nikos C. and Ivanova, Natalia N. and Mikhailova, Natalia and Pagani, Loanna and Woyke, Tanja and Arkin, Adam P. and Dehal, Paramvir and Chivian, Dylan and Criddle, Craig S. and Wu, Weimin and Chakraborty, Romy and Hazen, Terry C. and Fields, Matthew W.},
abstractNote = {Desulfovibrio carbinoliphilus subsp. oakridgensis FW-101-2B is an anaerobic, organic acid/alcohol-oxidizing, sulfate-reducing δ-proteobacterium. FW-101-2B was isolated from contaminated groundwater at The Field Research Center at Oak Ridge National Lab after in situ stimulation for heavy metal-reducing conditions. The genome will help elucidate the metabolic potential of sulfate-reducing bacteria during uranium reduction.},
doi = {10.1128/genomeA.00092-15},
journal = {Genome Announcements},
number = 2,
volume = 3,
place = {United States},
year = {Thu Mar 12 00:00:00 EDT 2015},
month = {Thu Mar 12 00:00:00 EDT 2015}
}
Copy to clipboard
Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.00092-15
Copyright Statement
Other availability
Search WorldCat Search WorldCat to find libraries that may hold this journal
Save / Share:
Export Metadata
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.

Works referenced in this record:

In Situ Bioreduction of Uranium (VI) to Submicromolar Levels and Reoxidation by Dissolved Oxygen
journal, August 2007

  • Wu, Wei-Min; Carley, Jack; Luo, Jian
  • Environmental Science & Technology, Vol. 41, Issue 16
  • DOI: 10.1021/es062657b

Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths
journal, September 2008

  • Hwang, Chiachi; Wu, Weimin; Gentry, Terry J.
  • The ISME Journal, Vol. 3, Issue 1
  • DOI: 10.1038/ismej.2008.77

Temporal Transcriptomic Analysis as Desulfovibrio vulgaris Hildenborough Transitions into Stationary Phase during Electron Donor Depletion
journal, August 2006

  • Clark, M. E.; He, Q.; He, Z.
  • Applied and Environmental Microbiology, Vol. 72, Issue 8
  • DOI: 10.1128/AEM.00284-06

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010

IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009

Shifting the genomic gold standard for the prokaryotic species definition
journal, October 2009

  • Richter, Michael; Rosselló-Móra, Ramon
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 45
  • DOI: 10.1073/pnas.0906412106
    Sort by:
    [ × clear filter / sort ]

    Similar Records in DOE PAGES and OSTI.GOV collections: