Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania
Abstract
Modern mineral deposits play an important role in evolutionary studies by providing clues to the formation of ancient lithified microbial communities. Here we report the presence of microbialite-forming microbial mats in different microenvironments at 32°C, 49°C, and 65°C around the geothermal spring from an abandoned oil drill in Ciocaia, Romania. The mineralogy and the macro- and microstructure of the microbialites were investigated, together with their microbial diversity based on a 16S rRNA gene amplicon sequencing approach. The calcium carbonate is deposited mainly in the form of calcite. At 32°C and 49°C, the microbialites show a laminated structure with visible microbial mat-carbonate crystal interactions. At 65°C, the mineral deposit is clotted, without obvious organic residues. Partial 16S rRNA gene amplicon sequencing showed that the relative abundance of the phylum Archaea was low at 32°C (<0.5%) but increased significantly at 65°C (36%). The bacterial diversity was either similar to other microbialites described in literature (the 32°C sample) or displayed a specific combination of phyla and classes (the 49°C and 65°C samples). Bacterial taxa were distributed among 39 phyla, out of which 14 had inferred abundances >1%. The dominant bacterial groups at 32°C were Cyanobacteria, Gammaproteobacteria, Firmicutes, Bacteroidetes, Chloroflexi, Thermi, Actinobacteria, Planctomycetes, andmore »
- Authors:
-
- National Inst. of Research and Development for Biological Sciences, Cluj-Napoca (Romania). Inst. of Biological Research; Babe,s-Bolyai Univ., Cluj-Napoca (Romania)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Colorado State Univ., Fort Collins, CO (United States). Fish, Wildlife, and Conservation Biology
- Babe,s-Bolyai Univ., Cluj-Napoca (Romania); Kazan Federal Univ., Tatarstan (Russia)
- Babe,s-Bolyai Univ., Cluj-Napoca (Romania)
- Biological Research Center, Jibou (Romania)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1260667
- Grant/Contract Number:
- PD104/2012; PN09-360201
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 6; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; hotsprings; carbonate; biomineralization; amplicon sequencing; microbial diversity; oil drill
Citation Formats
Coman, Cristian, Chiriac, Cecilia M., Robeson, Michael S., Ionescu, Corina, Dragos, Nicolae, Barbu-Tudoran, Lucian, Andrei, Adrian-Åžtefan, Banciu, Horia L., Sicora, Cosmin, and Podar, Mircea. Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania. United States: N. p., 2015.
Web. doi:10.3389/fmicb.2015.00253.
Coman, Cristian, Chiriac, Cecilia M., Robeson, Michael S., Ionescu, Corina, Dragos, Nicolae, Barbu-Tudoran, Lucian, Andrei, Adrian-Åžtefan, Banciu, Horia L., Sicora, Cosmin, & Podar, Mircea. Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania. United States. https://doi.org/10.3389/fmicb.2015.00253
Coman, Cristian, Chiriac, Cecilia M., Robeson, Michael S., Ionescu, Corina, Dragos, Nicolae, Barbu-Tudoran, Lucian, Andrei, Adrian-Åžtefan, Banciu, Horia L., Sicora, Cosmin, and Podar, Mircea. Mon .
"Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania". United States. https://doi.org/10.3389/fmicb.2015.00253. https://www.osti.gov/servlets/purl/1260667.
@article{osti_1260667,
title = {Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania},
author = {Coman, Cristian and Chiriac, Cecilia M. and Robeson, Michael S. and Ionescu, Corina and Dragos, Nicolae and Barbu-Tudoran, Lucian and Andrei, Adrian-Åžtefan and Banciu, Horia L. and Sicora, Cosmin and Podar, Mircea},
abstractNote = {Modern mineral deposits play an important role in evolutionary studies by providing clues to the formation of ancient lithified microbial communities. Here we report the presence of microbialite-forming microbial mats in different microenvironments at 32°C, 49°C, and 65°C around the geothermal spring from an abandoned oil drill in Ciocaia, Romania. The mineralogy and the macro- and microstructure of the microbialites were investigated, together with their microbial diversity based on a 16S rRNA gene amplicon sequencing approach. The calcium carbonate is deposited mainly in the form of calcite. At 32°C and 49°C, the microbialites show a laminated structure with visible microbial mat-carbonate crystal interactions. At 65°C, the mineral deposit is clotted, without obvious organic residues. Partial 16S rRNA gene amplicon sequencing showed that the relative abundance of the phylum Archaea was low at 32°C (<0.5%) but increased significantly at 65°C (36%). The bacterial diversity was either similar to other microbialites described in literature (the 32°C sample) or displayed a specific combination of phyla and classes (the 49°C and 65°C samples). Bacterial taxa were distributed among 39 phyla, out of which 14 had inferred abundances >1%. The dominant bacterial groups at 32°C were Cyanobacteria, Gammaproteobacteria, Firmicutes, Bacteroidetes, Chloroflexi, Thermi, Actinobacteria, Planctomycetes, and Defferibacteres. At 49°C, there was a striking dominance of the Gammaproteobacteria, followed by Firmicutes, Bacteroidetes, and Armantimonadetes. The 65°C sample was dominated by Betaproteobacteria, Firmicutes, [OP1], Defferibacteres, Thermi, Thermotogae, [EM3], and Nitrospirae. Lastly, several groups from Proteobacteria and Firmicutes, together with Halobacteria and Melainabacteria were described for the first time in calcium carbonate deposits. Overall, the spring from Ciocaia emerges as a valuable site to probe microbes-minerals interrelationships along thermal and geochemical gradients.},
doi = {10.3389/fmicb.2015.00253},
journal = {Frontiers in Microbiology},
number = ,
volume = 6,
place = {United States},
year = {2015},
month = {3}
}
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Works referenced in this record:
Hot spring siliceous stromatolites from Yellowstone National Park: assessing growth rate and laminae formation: Siliceous stromatolite growth rates
journal, July 2011
- Berelson, W. M.; Corsetti, F. A.; Pepe-Ranney, C.
- Geobiology
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
journal, August 2013
- Langille, Morgan G. I.; Zaneveld, Jesse; Caporaso, J. Gregory
- Nature Biotechnology, Vol. 31, Issue 9
Pavilion Lake Microbialites: Morphological, Molecular and Biochemical Evidence for a Cold-Water Transition to Colonial Aggregates
journal, December 2012
- Schulze-Makuch, Dirk; Lim, Darlene; Laval, Bernard
- Life, Vol. 3, Issue 1
Practical innovations for high-throughput amplicon sequencing
journal, September 2013
- Lundberg, Derek S.; Yourstone, Scott; Mieczkowski, Piotr
- Nature Methods, Vol. 10, Issue 10
Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel)
journal, April 2007
- Schwarz, Julia I. K.; Eckert, Werner; Conrad, Ralf
- Systematic and Applied Microbiology, Vol. 30, Issue 3
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
journal, June 2007
- Wang, Q.; Garrity, G. M.; Tiedje, J. M.
- Applied and Environmental Microbiology, Vol. 73, Issue 16
Archaeal and bacterial diversity in two hot spring microbial mats from a geothermal region in Romania
journal, April 2013
- Coman, Cristian; Drugă, Bogdan; Hegedus, Adriana
- Extremophiles, Vol. 17, Issue 3
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010
- Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P.
- PLoS ONE, Vol. 5, Issue 3
Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium
journal, April 1999
- Hayashi, N. R.; Ishida, T.; Yokota, A.
- International Journal of Systematic Bacteriology, Vol. 49, Issue 2
ISOLATION AND BIOCHEMICAL CHARACTERIZATION OF EXTRACELLULAR POLYMERIC SECRETIONS (EPS) FROM MODERN SOFT MARINE STROMATOLITES (BAHAMAS) AND ITS INHIBITORY EFFECT ON CACO 3 PRECIPITATION
journal, March 2002
- Kawaguchi, Tomohiro; Decho, Alan W.
- Preparative Biochemistry and Biotechnology, Vol. 32, Issue 1
Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments
journal, January 2014
- Sharp, Christine E.; Brady, Allyson L.; Sharp, Glen H.
- The ISME Journal, Vol. 8, Issue 6
A fresh look at the fossil evidence for early Archaean cellular life
journal, May 2006
- Brasier, Martin; McLoughlin, Nicola; Green, Owen
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1470
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
journal, December 2012
- Fierer, N.; Leff, J. W.; Adams, B. J.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 52
Metagenomic and Metabolic Profiling of Nonlithifying and Lithifying Stromatolitic Mats of Highborne Cay, The Bahamas
journal, May 2012
- Khodadad, Christina L. M.; Foster, Jamie S.
- PLoS ONE, Vol. 7, Issue 5
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
journal, May 2012
- Pruesse, Elmar; Peplies, Jörg; Glöckner, Frank Oliver
- Bioinformatics, Vol. 28, Issue 14
Stromatolites 3,400–3,500 Myr old from the North Pole area, Western Australia
journal, April 1980
- Walter, M. R.; Buick, R.; Dunlop, J. S. R.
- Nature, Vol. 284, Issue 5755
Microbial Species Richness and Metabolic Activities in Hypersaline Microbial Mats: Insight into Biosignature Formation Through Lithification
journal, November 2009
- Baumgartner, Laura K.; Dupraz, Christophe; Buckley, Daniel H.
- Astrobiology, Vol. 9, Issue 9
ARB: a software environment for sequence data
journal, February 2004
- Ludwig, W.
- Nucleic Acids Research, Vol. 32, Issue 4
Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield
journal, August 2013
- Nyyssönen, Mari; Hultman, Jenni; Ahonen, Lasse
- The ISME Journal, Vol. 8, Issue 1
Microbial diversity in Tunisian geothermal springs as detected by molecular and culture-based approaches
journal, September 2010
- Sayeh, Raja; Birrien, Jean Louis; Alain, Karine
- Extremophiles, Vol. 14, Issue 6
Insights into the phylogeny and coding potential of microbial dark matter
journal, July 2013
- Rinke, Christian; Schwientek, Patrick; Sczyrba, Alexander
- Nature, Vol. 499, Issue 7459
Origin of 3.45 Ga coniform stromatolites in Warrawoona Group, Western Australia
journal, August 1999
- Hofmann, H. J.; Grey, K.; Hickman, A. H.
- Geological Society of America Bulletin, Vol. 111, Issue 8
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
journal, June 2011
- Werner, Jeffrey J.; Koren, Omry; Hugenholtz, Philip
- The ISME Journal, Vol. 6, Issue 1
Enigmatic, ultrasmall, uncultivated Archaea
journal, April 2010
- Baker, B. J.; Comolli, L. R.; Dick, G. J.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 19
Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean
journal, August 2013
- Cavalcanti, Giselle S.; Gregoracci, Gustavo B.; dos Santos, Eidy O.
- The ISME Journal, Vol. 8, Issue 1
Cutadapt removes adapter sequences from high-throughput sequencing reads
journal, May 2011
- Martin, Marcel
- EMBnet.journal, Vol. 17, Issue 1
The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism
journal, October 2005
- Badger, Murray R.; Price, G. Dean; Long, Ben M.
- Journal of Experimental Botany, Vol. 57, Issue 2
PyNAST: a flexible tool for aligning sequences to a template alignment
journal, November 2009
- Caporaso, J. G.; Bittinger, K.; Bushman, F. D.
- Bioinformatics, Vol. 26, Issue 2
Growth of synthetic stromatolites and wrinkle structures in the absence of microbes – implications for the early fossil record
journal, March 2008
- Mcloughlin, N.; Wilson, L. A.; Brasier, M. D.
- Geobiology, Vol. 6, Issue 2
Characterization of bacterial diversity associated with microbial mats, gypsum evaporites and carbonate microbialites in thalassic wetlands: Tebenquiche and La Brava, Salar de Atacama, Chile
journal, January 2014
- Farías, M. E.; Contreras, M.; Rasuk, M. C.
- Extremophiles, Vol. 18, Issue 2
Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization: Microbial and functional diversity of subsurface aquifer
journal, November 2012
- Tiago, Igor; Veríssimo, António
- Environmental Microbiology, Vol. 15, Issue 6
Microbial diversity with dominance of 16S rRNA gene sequences with high GC contents at 74 and 98 °C subsurface crude oil deposits in Japan: Microorganisms in subsurface crude oil deposits
journal, February 2011
- Yamane, Kunio; Hattori, Yoshiyuki; Ohtagaki, Hiroshi
- FEMS Microbiology Ecology, Vol. 76, Issue 2
Photosynthetic microbial mats in the 3,416-Myr-old ocean
journal, September 2004
- Tice, Michael M.; Lowe, Donald R.
- Nature, Vol. 431, Issue 7008
Aerobic microbial dolomite at the nanometer scale: Implications for the geologic record
journal, January 2008
- Sánchez-Román, Mónica; Vasconcelos, Crisógono; Schmid, Thomas
- Geology, Vol. 36, Issue 11
Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay
journal, December 2008
- Goh, Falicia; Allen, Michelle A.; Leuko, Stefan
- The ISME Journal, Vol. 3, Issue 4
Interactive metagenomic visualization in a Web browser
journal, September 2011
- Ondov, Brian D.; Bergman, Nicholas H.; Phillippy, Adam M.
- BMC Bioinformatics, Vol. 12, Issue 1
UPARSE: highly accurate OTU sequences from microbial amplicon reads
journal, August 2013
- Edgar, Robert C.
- Nature Methods, Vol. 10, Issue 10
Effects of Elevated Carbon Dioxide and Salinity on the Microbial Diversity in Lithifying Microbial Mats
journal, March 2014
- Ahrendt, Steven; Mobberley, Jennifer; Visscher, Pieter
- Minerals, Vol. 4, Issue 1
Microbial Characterization of Microbial Ecosystems Associated to Evaporites Domes of Gypsum in Salar de Llamara in Atacama Desert
journal, May 2014
- Rasuk, Maria Cecilia; Kurth, Daniel; Flores, Maria Regina
- Microbial Ecology, Vol. 68, Issue 3
Short pyrosequencing reads suffice for accurate microbial community analysis
journal, August 2007
- Liu, Z.; Lozupone, C.; Hamady, M.
- Nucleic Acids Research, Vol. 35, Issue 18
Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas
journal, January 2009
- Foster, Jamie S.; Green, Stefan J.; Ahrendt, Steven R.
- The ISME Journal, Vol. 3, Issue 5
jModelTest: Phylogenetic Model Averaging
journal, April 2008
- Posada, D.
- Molecular Biology and Evolution, Vol. 25, Issue 7
Differential microbial communities in hot spring mats from Western Thailand
journal, December 2008
- Portillo, M. C.; Sririn, V.; Kanoksilapatham, W.
- Extremophiles, Vol. 13, Issue 2
Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing: Microbial diversity in modern thrombolitic mats
journal, June 2011
- Mobberley, Jennifer M.; Ortega, Maya C.; Foster, Jamie S.
- Environmental Microbiology, Vol. 14, Issue 1
Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico
journal, January 2009
- Breitbart, Mya; Hoare, Ana; Nitti, Anthony
- Environmental Microbiology, Vol. 11, Issue 1
The Characterization of Caco<SUB>3</SUB> in a Geothermal Environment: a SEM/TEM-EELS study
journal, October 2012
- Kim, Jin-wook; Kogure, Toshihiro; Yang, Kiho
- Clays and Clay Minerals, Vol. 60, Issue 5
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
journal, November 2014
- Stoddard, Steven F.; Smith, Byron J.; Hein, Robert
- Nucleic Acids Research, Vol. 43, Issue D1
Early Life Recorded in Archean Pillow Lavas
journal, April 2004
- Furnes, H.
- Science, Vol. 304, Issue 5670
A hydrogen-based subsurface microbial community dominated by methanogens
journal, January 2002
- Chapelle, Francis H.; O'Neill, Kathleen; Bradley, Paul M.
- Nature, Vol. 415, Issue 6869
Sensing inorganic carbon: CO2 and HCO3−
journal, May 2006
- Raven, John A.
- Biochemical Journal, Vol. 396, Issue 2
Purification of bacterial genomic DNA in less than 20 min using chelex-100 microwave: examples from strains of lactic acid bacteria isolated from soil samples
journal, June 2010
- Reyes-Escogido, Lourdes; Balam-Chi, Mario; Rodríguez-Buenfil, Ingrid
- Antonie van Leeuwenhoek, Vol. 98, Issue 4
Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific
journal, June 2013
- Schneider, Dominik; Arp, Gernot; Reimer, Andreas
- PLoS ONE, Vol. 8, Issue 6
Comparison of Microbial Community Compositions of Injection and Production Well Samples in a Long-Term Water-Flooded Petroleum Reservoir
journal, August 2011
- Ren, Hong-Yan; Zhang, Xiao-Jun; Song, Zhi-yong
- PLoS ONE, Vol. 6, Issue 8
Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats
journal, July 2013
- Mobberley, Jennifer M.; Khodadad, Christina L. M.; Foster, Jamie S.
- Photosynthesis Research, Vol. 118, Issue 1-2
Processes of carbonate precipitation in modern microbial mats
journal, October 2009
- Dupraz, Christophe; Reid, R. Pamela; Braissant, Olivier
- Earth-Science Reviews, Vol. 96, Issue 3
Microbialite genetic diversity and composition relate to environmental variables
journal, August 2012
- Centeno, Carla M.; Legendre, Pierre; Beltrán, Yislem
- FEMS Microbiology Ecology, Vol. 82, Issue 3
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
journal, May 2011
- Tamura, K.; Peterson, D.; Peterson, N.
- Molecular Biology and Evolution, Vol. 28, Issue 10
QIIME allows analysis of high-throughput community sequencing data
journal, April 2010
- Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
- Nature Methods, Vol. 7, Issue 5
Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park: Cyanobacterial diversity of YNP stromatolites
journal, February 2012
- Pepe-Ranney, Charles; Berelson, William M.; Corsetti, Frank A.
- Environmental Microbiology, Vol. 14, Issue 5
Microbial community in a geothermal aquifer associated with the subsurface of the Great Artesian Basin, Australia
journal, June 2005
- Kimura, Hiroyuki; Sugihara, Maki; Yamamoto, Hiroyuki
- Extremophiles, Vol. 9, Issue 5
Ca–Mg kutnahorite and struvite production by Idiomarina strains at modern seawater salinities
journal, June 2008
- González-Muñoz, María Teresa; De Linares, Concepción; Martínez-Ruiz, Francisca
- Chemosphere, Vol. 72, Issue 3
Methodological constraints in the molecular biodiversity study of a thermomineral spring cyanobacterial mat: a case study
journal, July 2010
- Coman, Cristian; Bica, Adriana; Drugă, Bogdan
- Antonie van Leeuwenhoek, Vol. 99, Issue 2
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
journal, December 2010
- Nunoura, Takuro; Takaki, Yoshihiro; Kakuta, Jungo
- Nucleic Acids Research, Vol. 39, Issue 8
Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain
journal, June 2010
- Santos, Fernando; Peña, Arantxa; Nogales, Balbina
- Systematic and Applied Microbiology, Vol. 33, Issue 4
Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia
journal, August 2005
- Papineau, D.; Walker, J. J.; Mojzsis, S. J.
- Applied and Environmental Microbiology, Vol. 71, Issue 8
Microbial lithification in marine stromatolites and hypersaline mats
journal, September 2005
- Dupraz, Christophe; Visscher, Pieter T.
- Trends in Microbiology, Vol. 13, Issue 9
Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas: Geomicrobiology of modern marine thrombolites
journal, August 2010
- Myshrall, K. L.; Mobberley, J. M.; Green, S. J.
- Geobiology, Vol. 8, Issue 4
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
journal, December 2011
- McDonald, Daniel; Price, Morgan N.; Goodrich, Julia
- The ISME Journal, Vol. 6, Issue 3
The First Billion Years: When Did Life Emerge?
journal, August 2006
- Schopf, J. W.
- Elements, Vol. 2, Issue 4
Precipitation of amorphous CaCO3 (aragonite-like) by cyanobacteria: A STXM study of the influence of EPS on the nucleation process
journal, July 2009
- Obst, M.; Dynes, J. J.; Lawrence, J. R.
- Geochimica et Cosmochimica Acta, Vol. 73, Issue 14
The role of microbes in accretion, lamination and early lithification of modern marine stromatolites
journal, August 2000
- Reid, R. P.; Visscher, P. T.; Decho, A. W.
- Nature, Vol. 406, Issue 6799
Diversity of Microbial Communities in Production and Injection Waters of Algerian Oilfields Revealed by 16S rRNA Gene Amplicon 454 Pyrosequencing
journal, June 2013
- Lenchi, Nesrine; İnceoğlu, Özgül; Kebbouche-Gana, Salima
- PLoS ONE, Vol. 8, Issue 6
An actualistic perspective into Archean worlds - (cyano-)bacterially induced sedimentary structures in the siliciclastic Nhlazatse Section, 2.9 Ga Pongola Supergroup, South Africa: (Cyano-)bacterial mats in Mesoarchean tidal flats
journal, December 2007
- Noffke, N.; Beukes, N.; Bower, D.
- Geobiology, Vol. 6, Issue 1
Microbial Communities in Long-Term, Water-Flooded Petroleum Reservoirs with Different in situ Temperatures in the Huabei Oilfield, China
journal, March 2012
- Tang, Yue-Qin; Li, Yan; Zhao, Jie-Yu
- PLoS ONE, Vol. 7, Issue 3
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
journal, September 2012
- Huson, Daniel H.; Scornavacca, Celine
- Systematic Biology, Vol. 61, Issue 6
Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay
journal, January 2009
- Allen, M. A.; Goh, F.; Burns, B. P.
- Geobiology, Vol. 7, Issue 1
Stromatolite reef from the Early Archaean era of Australia
journal, June 2006
- Allwood, Abigail C.; Walter, Malcolm R.; Kamber, Balz S.
- Nature, Vol. 441, Issue 7094
Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico
journal, July 2012
- Nitti, Anthony; Daniels, Camille A.; Siefert, Janet
- Astrobiology, Vol. 12, Issue 7
The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes
journal, January 2013
- Farías, María E.; Rascovan, Nicolás; Toneatti, Diego M.
- PLoS ONE, Vol. 8, Issue 1
Microbial Community Structure in Three Deep-Sea Carbonate Crusts
journal, August 2006
- Heijs, S. K.; Aloisi, G.; Bouloubassi, I.
- Microbial Ecology, Vol. 52, Issue 3
Prokaryotic and Eukaryotic Community Structure in Field and Cultured Microbialites from the Alkaline Lake Alchichica (Mexico)
journal, December 2011
- Couradeau, Estelle; Benzerara, Karim; Moreira, David
- PLoS ONE, Vol. 6, Issue 12
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
journal, October 2003
- Guindon, Stéphane; Gascuel, Olivier
- Systematic Biology, Vol. 52, Issue 5
Research on the thermal waters of the western plain of romania
journal, January 1981
- Tenu, A.; Constantinescu, T.; Davidescu, F.
- Geothermics, Vol. 10, Issue 1
Exopolymeric substances of sulfate-reducing bacteria: Interactions with calcium at alkaline pH and implication for formation of carbonate minerals
journal, December 2007
- Braissant, O.; Decho, A. W.; Dupraz, C.
- Geobiology, Vol. 5, Issue 4
DNA extraction approaches substantially influence the assessment of the human breast milk microbiome
journal, January 2020
- Douglas, Chloe A.; Ivey, Kerry L.; Papanicolas, Lito E.
- Scientific Reports, Vol. 10, Issue 1
Microbial Dysbiosis During Simian Immunodeficiency Virus Infection is Partially Reverted with Combination Anti-retroviral Therapy
journal, April 2020
- Blum, Faith C.; Hardy, Britney L.; Bishop-Lilly, Kimberly A.
- Scientific Reports, Vol. 10, Issue 1
Analysis of the Sulfate-Reducing Bacterial and Methanogenic Archaeal Populations in Contrasting Antarctic Sediments
journal, June 2006
- Purdy, K. J.; Nedwell, D. B.; Embley, T. M.
- Applied and Environmental Microbiology, Vol. 72, Issue 6
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants
journal, April 2021
- Dang, Hanli; Zhang, Tao; Wang, Zhongke
- BMC Plant Biology, Vol. 21, Issue 1
Pavilion Lake Microbialites: Morphological, Molecular and Biochemical Evidence for a Cold-Water Transition to Colonial Aggregates
text, January 2019
- Schulze-Makuch, Dirk; Lim, Darlene; Laval, Bernard
- Multidisciplinary Digital Publishing Institute
Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific
text, January 2013
- Schneider, Dominik; Arp, Gernot; Reimer, Andreas
- FID GEO
Bacterial zonation, photosynthesis, and spectral light distribution in hot spring microbial mats of Iceland
journal, September 1988
- Jørgensen, Bo Barker; Nelson, Douglas C.
- Microbial Ecology, Vol. 16, Issue 2
Microbial Community Structure in Three Deep-Sea Carbonate Crusts
journal, August 2006
- Heijs, S. K.; Aloisi, G.; Bouloubassi, I.
- Microbial Ecology, Vol. 52, Issue 3
Microbial Characterization of Microbial Ecosystems Associated to Evaporites Domes of Gypsum in Salar de Llamara in Atacama Desert
journal, May 2014
- Rasuk, Maria Cecilia; Kurth, Daniel; Flores, Maria Regina
- Microbial Ecology, Vol. 68, Issue 3
Microbial community in a geothermal aquifer associated with the subsurface of the Great Artesian Basin, Australia
journal, June 2005
- Kimura, Hiroyuki; Sugihara, Maki; Yamamoto, Hiroyuki
- Extremophiles, Vol. 9, Issue 5
Differential microbial communities in hot spring mats from Western Thailand
journal, December 2008
- Portillo, M. C.; Sririn, V.; Kanoksilapatham, W.
- Extremophiles, Vol. 13, Issue 2
Microbial diversity in Tunisian geothermal springs as detected by molecular and culture-based approaches
journal, September 2010
- Sayeh, Raja; Birrien, Jean Louis; Alain, Karine
- Extremophiles, Vol. 14, Issue 6
Archaeal and bacterial diversity in two hot spring microbial mats from a geothermal region in Romania
journal, April 2013
- Coman, Cristian; Drugă, Bogdan; Hegedus, Adriana
- Extremophiles, Vol. 17, Issue 3
Characterization of bacterial diversity associated with microbial mats, gypsum evaporites and carbonate microbialites in thalassic wetlands: Tebenquiche and La Brava, Salar de Atacama, Chile
journal, January 2014
- Farías, M. E.; Contreras, M.; Rasuk, M. C.
- Extremophiles, Vol. 18, Issue 2
Purification of bacterial genomic DNA in less than 20 min using chelex-100 microwave: examples from strains of lactic acid bacteria isolated from soil samples
journal, June 2010
- Reyes-Escogido, Lourdes; Balam-Chi, Mario; Rodríguez-Buenfil, Ingrid
- Antonie van Leeuwenhoek, Vol. 98, Issue 4
Methodological constraints in the molecular biodiversity study of a thermomineral spring cyanobacterial mat: a case study
journal, July 2010
- Coman, Cristian; Bica, Adriana; Drugă, Bogdan
- Antonie van Leeuwenhoek, Vol. 99, Issue 2
Genome-wide identification, structural analysis and expression profiles of GRAS gene family in orchardgrass
journal, February 2020
- Xu, Xiaoheng; Feng, Guangyan; Huang, Linkai
- Molecular Biology Reports, Vol. 47, Issue 3
Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats
journal, July 2013
- Mobberley, Jennifer M.; Khodadad, Christina L. M.; Foster, Jamie S.
- Photosynthesis Research, Vol. 118, Issue 1-2
Microfossils and possible microfossils from the early archean onverwacht group, Barberton mountain land, South Africa
journal, January 1992
- Walsh, Maud W.
- Precambrian Research, Vol. 54, Issue 2-4
Research on the thermal waters of the western plain of romania
journal, January 1981
- Tenu, A.; Constantinescu, T.; Davidescu, F.
- Geothermics, Vol. 10, Issue 1
Ca–Mg kutnahorite and struvite production by Idiomarina strains at modern seawater salinities
journal, June 2008
- González-Muñoz, María Teresa; De Linares, Concepción; Martínez-Ruiz, Francisca
- Chemosphere, Vol. 72, Issue 3
Processes of carbonate precipitation in modern microbial mats
journal, October 2009
- Dupraz, Christophe; Reid, R. Pamela; Braissant, Olivier
- Earth-Science Reviews, Vol. 96, Issue 3
Precipitation of amorphous CaCO3 (aragonite-like) by cyanobacteria: A STXM study of the influence of EPS on the nucleation process
journal, July 2009
- Obst, M.; Dynes, J. J.; Lawrence, J. R.
- Geochimica et Cosmochimica Acta, Vol. 73, Issue 14
Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel)
journal, April 2007
- Schwarz, Julia I. K.; Eckert, Werner; Conrad, Ralf
- Systematic and Applied Microbiology, Vol. 30, Issue 3
Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain
journal, June 2010
- Santos, Fernando; Peña, Arantxa; Nogales, Balbina
- Systematic and Applied Microbiology, Vol. 33, Issue 4
Microbial lithification in marine stromatolites and hypersaline mats
journal, September 2005
- Dupraz, Christophe; Visscher, Pieter T.
- Trends in Microbiology, Vol. 13, Issue 9
A laboratory investigation of cyanobacterial extracellular polymeric secretions (EPS) in influencing CaCO3 polymorphism
journal, April 2002
- Kawaguchi, T.; Decho, A. W.
- Journal of Crystal Growth, Vol. 240, Issue 1-2
Stromatolites 3,400–3,500 Myr old from the North Pole area, Western Australia
journal, April 1980
- Walter, M. R.; Buick, R.; Dunlop, J. S. R.
- Nature, Vol. 284, Issue 5755
The role of microbes in accretion, lamination and early lithification of modern marine stromatolites
journal, August 2000
- Reid, R. P.; Visscher, P. T.; Decho, A. W.
- Nature, Vol. 406, Issue 6799
A hydrogen-based subsurface microbial community dominated by methanogens
journal, January 2002
- Chapelle, Francis H.; O'Neill, Kathleen; Bradley, Paul M.
- Nature, Vol. 415, Issue 6869
Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay
journal, December 2008
- Goh, Falicia; Allen, Michelle A.; Leuko, Stefan
- The ISME Journal, Vol. 3, Issue 4
Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas
journal, January 2009
- Foster, Jamie S.; Green, Stefan J.; Ahrendt, Steven R.
- The ISME Journal, Vol. 3, Issue 5
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
journal, June 2011
- Werner, Jeffrey J.; Koren, Omry; Hugenholtz, Philip
- The ISME Journal, Vol. 6, Issue 1
Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield
journal, August 2013
- Nyyssönen, Mari; Hultman, Jenni; Ahonen, Lasse
- The ISME Journal, Vol. 8, Issue 1
Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean
journal, August 2013
- Cavalcanti, Giselle S.; Gregoracci, Gustavo B.; dos Santos, Eidy O.
- The ISME Journal, Vol. 8, Issue 1
Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments
journal, January 2014
- Sharp, Christine E.; Brady, Allyson L.; Sharp, Glen H.
- The ISME Journal, Vol. 8, Issue 6
Photosynthetic microbial mats in the 3,416-Myr-old ocean
journal, September 2004
- Tice, Michael M.; Lowe, Donald R.
- Nature, Vol. 431, Issue 7008
Stromatolite reef from the Early Archaean era of Australia
journal, June 2006
- Allwood, Abigail C.; Walter, Malcolm R.; Kamber, Balz S.
- Nature, Vol. 441, Issue 7094
Insights into the phylogeny and coding potential of microbial dark matter
journal, July 2013
- Rinke, Christian; Schwientek, Patrick; Sczyrba, Alexander
- Nature, Vol. 499, Issue 7459
UPARSE: highly accurate OTU sequences from microbial amplicon reads
journal, August 2013
- Edgar, Robert C.
- Nature Methods, Vol. 10, Issue 10
Practical innovations for high-throughput amplicon sequencing
journal, September 2013
- Lundberg, Derek S.; Yourstone, Scott; Mieczkowski, Piotr
- Nature Methods, Vol. 10, Issue 10
Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model
journal, April 2018
- Hryckowian, Andrew J.; Van Treuren, William; Smits, Samuel A.
- Nature Microbiology, Vol. 3, Issue 6
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
journal, September 2020
- Hughes, Riley L.; Arnold, Charles D.; Young, Rebecca R.
- Scientific Reports, Vol. 10, Issue 1
Environmental factors shape the epiphytic bacterial communities of Gracilariopsis lemaneiformis
journal, April 2021
- Pei, Pengbing; Aslam, Muhammad; Du, Hong
- Scientific Reports, Vol. 11, Issue 1
Regulation of prokaryotic adenylyl cyclases by CO2
journal, May 2006
- Hammer, Arne; Hodgson, David R. W.; Cann, Martin J.
- Biochemical Journal, Vol. 396, Issue 2
Enigmatic, ultrasmall, uncultivated Archaea
journal, April 2010
- Baker, B. J.; Comolli, L. R.; Dick, G. J.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 19
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
journal, December 2012
- Fierer, N.; Leff, J. W.; Adams, B. J.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 52
Microbial Species Richness and Metabolic Activities in Hypersaline Microbial Mats: Insight into Biosignature Formation Through Lithification
journal, November 2009
- Baumgartner, Laura K.; Dupraz, Christophe; Buckley, Daniel H.
- Astrobiology, Vol. 9, Issue 9
Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico
journal, July 2012
- Nitti, Anthony; Daniels, Camille A.; Siefert, Janet
- Astrobiology, Vol. 12, Issue 7
PyNAST: a flexible tool for aligning sequences to a template alignment
journal, November 2009
- Caporaso, J. G.; Bittinger, K.; Bushman, F. D.
- Bioinformatics, Vol. 26, Issue 2
The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism
journal, October 2005
- Badger, Murray R.; Price, G. Dean; Long, Ben M.
- Journal of Experimental Botany, Vol. 57, Issue 2
jModelTest: Phylogenetic Model Averaging
journal, April 2008
- Posada, D.
- Molecular Biology and Evolution, Vol. 25, Issue 7
ARB: a software environment for sequence data
journal, February 2004
- Ludwig, W.
- Nucleic Acids Research, Vol. 32, Issue 4
Short pyrosequencing reads suffice for accurate microbial community analysis
journal, August 2007
- Liu, Z.; Lozupone, C.; Hamady, M.
- Nucleic Acids Research, Vol. 35, Issue 18
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
journal, December 2010
- Nunoura, Takuro; Takaki, Yoshihiro; Kakuta, Jungo
- Nucleic Acids Research, Vol. 39, Issue 8
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
journal, November 2014
- Stoddard, Steven F.; Smith, Byron J.; Hein, Robert
- Nucleic Acids Research, Vol. 43, Issue D1
A fresh look at the fossil evidence for early Archaean cellular life
journal, May 2006
- Brasier, Martin; McLoughlin, Nicola; Green, Owen
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1470
Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium
journal, April 1999
- Hayashi, N. R.; Ishida, T.; Yokota, A.
- International Journal of Systematic Bacteriology, Vol. 49, Issue 2
Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico
journal, January 2009
- Breitbart, Mya; Hoare, Ana; Nitti, Anthony
- Environmental Microbiology, Vol. 11, Issue 1
Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing: Microbial diversity in modern thrombolitic mats
journal, June 2011
- Mobberley, Jennifer M.; Ortega, Maya C.; Foster, Jamie S.
- Environmental Microbiology, Vol. 14, Issue 1
Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park: Cyanobacterial diversity of YNP stromatolites
journal, February 2012
- Pepe-Ranney, Charles; Berelson, William M.; Corsetti, Frank A.
- Environmental Microbiology, Vol. 14, Issue 5
Exopolymeric substances of sulfate-reducing bacteria: Interactions with calcium at alkaline pH and implication for formation of carbonate minerals
journal, December 2007
- Braissant, O.; Decho, A. W.; Dupraz, C.
- Geobiology, Vol. 5, Issue 4
Growth of synthetic stromatolites and wrinkle structures in the absence of microbes – implications for the early fossil record
journal, March 2008
- Mcloughlin, N.; Wilson, L. A.; Brasier, M. D.
- Geobiology, Vol. 6, Issue 2
Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay
journal, January 2009
- Allen, M. A.; Goh, F.; Burns, B. P.
- Geobiology, Vol. 7, Issue 1
Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas: Geomicrobiology of modern marine thrombolites
journal, August 2010
- Myshrall, K. L.; Mobberley, J. M.; Green, S. J.
- Geobiology, Vol. 8, Issue 4
Microbial diversity with dominance of 16S rRNA gene sequences with high GC contents at 74 and 98 °C subsurface crude oil deposits in Japan: Microorganisms in subsurface crude oil deposits
journal, February 2011
- Yamane, Kunio; Hattori, Yoshiyuki; Ohtagaki, Hiroshi
- FEMS Microbiology Ecology, Vol. 76, Issue 2
Microbialite genetic diversity and composition relate to environmental variables
journal, August 2012
- Centeno, Carla M.; Legendre, Pierre; Beltrán, Yislem
- FEMS Microbiology Ecology, Vol. 82, Issue 3
Early Life Recorded in Archean Pillow Lavas
journal, April 2004
- Furnes, H.
- Science, Vol. 304, Issue 5670
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
journal, July 2006
- DeSantis, T. Z.; Hugenholtz, P.; Larsen, N.
- Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072
Population Structure and Phylogenetic Characterization of Marine Benthic Archaea in Deep-Sea Sediments
journal, October 1999
- Vetriani, Costantino; Jannasch, Holger W.; MacGregor, Barbara J.
- Applied and Environmental Microbiology, Vol. 65, Issue 10
Analysis of the Sulfate-Reducing Bacterial and Methanogenic Archaeal Populations in Contrasting Antarctic Sediments
journal, June 2003
- Purdy, K. J.; Nedwell, D. B.; Embley, T. M.
- Applied and Environmental Microbiology, Vol. 69, Issue 6
Survey of Archaeal Diversity Reveals an Abundance of Halophilic Archaea in a Low-Salt, Sulfide- and Sulfur-Rich Spring
journal, April 2004
- Elshahed, M. S.; Najar, F. Z.; Roe, B. A.
- Applied and Environmental Microbiology, Vol. 70, Issue 4
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
journal, December 2005
- Lozupone, C.; Knight, R.
- Applied and Environmental Microbiology, Vol. 71, Issue 12
Operation of the CO Dehydrogenase/Acetyl Coenzyme A Pathway in both Acetate Oxidation and Acetate Formation by the Syntrophically Acetate-Oxidizing Bacterium Thermacetogenium phaeum
journal, May 2005
- Hattori, S.; Galushko, A. S.; Kamagata, Y.
- Journal of Bacteriology, Vol. 187, Issue 10
Interactive metagenomic visualization in a Web browser
journal, September 2011
- Ondov, Brian D.; Bergman, Nicholas H.; Phillippy, Adam M.
- BMC Bioinformatics, Vol. 12, Issue 1
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010
- Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P.
- PLoS ONE, Vol. 5, Issue 3
Comparison of Microbial Community Compositions of Injection and Production Well Samples in a Long-Term Water-Flooded Petroleum Reservoir
journal, August 2011
- Ren, Hong-Yan; Zhang, Xiao-Jun; Song, Zhi-yong
- PLoS ONE, Vol. 6, Issue 8
Prokaryotic and Eukaryotic Community Structure in Field and Cultured Microbialites from the Alkaline Lake Alchichica (Mexico)
journal, December 2011
- Couradeau, Estelle; Benzerara, Karim; Moreira, David
- PLoS ONE, Vol. 6, Issue 12
Microbial Communities in Long-Term, Water-Flooded Petroleum Reservoirs with Different in situ Temperatures in the Huabei Oilfield, China
journal, March 2012
- Tang, Yue-Qin; Li, Yan; Zhao, Jie-Yu
- PLoS ONE, Vol. 7, Issue 3
The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes
journal, January 2013
- Farías, María E.; Rascovan, Nicolás; Toneatti, Diego M.
- PLoS ONE, Vol. 8, Issue 1
Diversity of Microbial Communities in Production and Injection Waters of Algerian Oilfields Revealed by 16S rRNA Gene Amplicon 454 Pyrosequencing
journal, June 2013
- Lenchi, Nesrine; İnceoğlu, Özgül; Kebbouche-Gana, Salima
- PLoS ONE, Vol. 8, Issue 6
Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific
journal, June 2013
- Schneider, Dominik; Arp, Gernot; Reimer, Andreas
- PLoS ONE, Vol. 8, Issue 6
Cutadapt removes adapter sequences from high-throughput sequencing reads
journal, May 2011
- Martin, Marcel
- EMBnet.journal, Vol. 17, Issue 1
Effects of Elevated Carbon Dioxide and Salinity on the Microbial Diversity in Lithifying Microbial Mats
journal, March 2014
- Ahrendt, Steven; Mobberley, Jennifer; Visscher, Pieter
- Minerals, Vol. 4, Issue 1
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
journal, October 2013
- Di Rienzi, Sara C.; Sharon, Itai; Wrighton, Kelly C.
- eLife, Vol. 2
Works referencing / citing this record:
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journal, November 2017
- Proemse, Bernadette C.; Eberhard, Rolan S.; Sharples, Chris
- Scientific Reports, Vol. 7, Issue 1
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journal, June 2018
- Liu, Yong-Chun; Huang, Ri-Ming; Bao, Jie
- FEMS Microbiology Letters, Vol. 365, Issue 15
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journal, December 2017
- Louyakis, Artemis S.; Gourlé, Hadrien; Casaburi, Giorgio
- Environmental Microbiology, Vol. 20, Issue 2
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journal, August 2017
- Chiriac, Cecilia M.; Szekeres, Edina; Rudi, Knut
- Applied and Environmental Microbiology, Vol. 83, Issue 21
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journal, September 2018
- Liang, Xiaoyu; Whitham, Jason M.; Holwerda, Evert K.
- Biotechnology for Biofuels, Vol. 11, Issue 1
Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
journal, November 2018
- Zhang, Bo; Xu, Xiangyang; Zhu, Liang
- AMB Express, Vol. 8, Issue 1
Environmental Factors Affecting Microbiota Dynamics during Traditional Solid-state Fermentation of Chinese Daqu Starter
journal, August 2016
- Li, Pan; Lin, Weifeng; Liu, Xiong
- Frontiers in Microbiology, Vol. 7
Exploring Biogeochemistry and Microbial Diversity of Extant Microbialites in Mexico and Cuba
journal, April 2018
- Valdespino-Castillo, Patricia M.; Hu, Ping; Merino-Ibarra, Martín
- Frontiers in Microbiology, Vol. 9
Stromatolites on the rise in peat-bound karstic wetlands
journal, November 2017
- Proemse, Bernadette C.; Eberhard, Rolan S.; Sharples, Chris
- Scientific Reports, Vol. 7, Issue 1
Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
journal, November 2018
- Zhang, Bo; Xu, Xiangyang; Zhu, Liang
- AMB Express, Vol. 8, Issue 1
Geological and Geochemical Controls on Subsurface Microbial Life in the Samail Ophiolite, Oman
journal, February 2017
- Rempfert, Kaitlin R.; Miller, Hannah M.; Bompard, Nicolas
- Frontiers in Microbiology, Vol. 8