High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods

Aizenberg-Gershtein, Yana; Izhaki, Ido; Lapidus, Alla; Copeland, Alex; Reddy, TBK; Huntemann, Marcel; Pillay, Manoj; Markowitz, Victor; Göker, Markus; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C.; Halpern, Malka

doi:10.1186/s40793-015-0127-5

Title: High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods

Abstract

© 2016 Aizenberg-Gershtein et al. Phaseolibacter flectens strain ATCC 12775 T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

Authors:

Aizenberg-Gershtein, Yana ^[1]; Izhaki, Ido ^[1]; Lapidus, Alla ^[2]; Copeland, Alex ^[3]; Reddy, TBK ^[3]; Huntemann, Marcel ^[3]; Pillay, Manoj ^[4]; Markowitz, Victor ^[4]; Göker, Markus ^[5]; Woyke, Tanja ^[3]; Klenk, Hans-Peter ^[6]; Kyrpides, Nikos C. ^[7]; Halpern, Malka ^[8]

Univ. of Haifa, Haifa (Israel)
St. Petersburg State Univ., St. Petersburg (Russia); St. Petersburg Academic University, St. Petersburg (Russia)
DOE Joint Genome Inst., Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Leibniz Institute DSMZ, Braunschweig (Germany)
Newcastle Univ., Newcastle upon Tyne (United Kingdom)
DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz University, Jeddah (Saudi Arabia)
Univ. of Haifa, Haifa (Israel); Univ. of Haifa, Oranim, Kiryat Tivon (Israel)

Publication Date:: Wed Jan 13 00:00:00 EST 2016

Research Org.:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI Identifier:: 1256944

Alternate Identifier(s):: OSTI ID: 1379033

Grant/Contract Number:: AC02-05CH11231; 1.38.253.2015; 1094/12

Resource Type:: Accepted Manuscript

Journal Name:: Standards in Genomic Sciences

Additional Journal Information:: Journal Volume: 11; Journal Issue: 1; Journal ID: ISSN 1944-3277

Publisher:: BioMed Central

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES; Phaseolibacter flectens; Enterobacteriaceae; plant pathogen; French bean pod; Phaseolus vulgaris

Citation Formats


                    Aizenberg-Gershtein, Yana, Izhaki, Ido, Lapidus, Alla, Copeland, Alex, Reddy, TBK, Huntemann, Marcel, Pillay, Manoj, Markowitz, Victor, Göker, Markus, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., and Halpern, Malka. High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods.  United States: N. p., 2016. 
Web.  doi:10.1186/s40793-015-0127-5.

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                    Aizenberg-Gershtein, Yana, Izhaki, Ido, Lapidus, Alla, Copeland, Alex, Reddy, TBK, Huntemann, Marcel, Pillay, Manoj, Markowitz, Victor, Göker, Markus, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., & Halpern, Malka. High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods.  United States.  https://doi.org/10.1186/s40793-015-0127-5

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                    Aizenberg-Gershtein, Yana, Izhaki, Ido, Lapidus, Alla, Copeland, Alex, Reddy, TBK, Huntemann, Marcel, Pillay, Manoj, Markowitz, Victor, Göker, Markus, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., and Halpern, Malka. Wed .  
"High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods".  United States.  https://doi.org/10.1186/s40793-015-0127-5.  https://www.osti.gov/servlets/purl/1256944.

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@article{osti_1256944,

  title        = {High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods},

  author       = {Aizenberg-Gershtein, Yana and Izhaki, Ido and Lapidus, Alla and Copeland, Alex and Reddy, TBK and Huntemann, Marcel and Pillay, Manoj and Markowitz, Victor and Göker, Markus and Woyke, Tanja and Klenk, Hans-Peter and Kyrpides, Nikos C. and Halpern, Malka},

  abstractNote = {© 2016 Aizenberg-Gershtein et al. Phaseolibacter flectens strain ATCC 12775 T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.},

  doi          = {10.1186/s40793-015-0127-5},

  journal      = {Standards in Genomic Sciences},

  number       = 1,

  volume       = 11,

  place        = {United States},

  year         = {Wed Jan 13 00:00:00 EST 2016},

  month        = {Wed Jan 13 00:00:00 EST 2016}

}

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