High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

Ntougias, Spyridon; Lapidus, Alla; Copeland, Alex; Reddy, T. B.  K.; Pati, Amrita; Ivanova, Natalia N.; Markowitz, Victor M.; Klenk, Hans-Peter; Woyke, Tanja; Fasseas, Constantinos; Kyrpides, Nikos C.; Zervakis, Georgios I.

doi:10.1186/s40793-015-0052-7

Title: High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

Journal Article · Thu Aug 13 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI: https://doi.org/10.1186/s40793-015-0052-7 · OSTI ID:1256934

Ntougias, Spyridon ^[1]; Lapidus, Alla ^[2]; Copeland, Alex ^[3]; Reddy, T. B. K. ^[3]; Pati, Amrita ^[3]; Ivanova, Natalia N. ^[3]; Markowitz, Victor M. ^[4]; Klenk, Hans-Peter ^[5]; Woyke, Tanja ^[3]; Fasseas, Constantinos ^[6]; Kyrpides, Nikos C. ^[7]; Zervakis, Georgios I. ^[6]

Democritus Univ. of Thrace, Xanthi (Greece)
St. Petersburg State Univ. (Russia)
Dept. of Energy Joint Genome Inst., Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Leibniz Inst. DSMZ, Braunschweig (Germany)
Agricultural Univ., Athens (Greece)
Dept. of Energy Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7T are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7T encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. Lastly, an emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1256934

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 10; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Nomenclature Abstract for Halotalea Ntougias et al. 2007 emend. Ntougias et al. 2015. NamesforLife https://doi.org/10.1601/nm.11348	dataset	January 2013

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Title: High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea

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