High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland
Abstract
We report that Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30 was isolated in Poland from a nodule recovered from the roots of Pisum sativum growing at Janow. GB30 is also an effective microsymbiont of the annual forage legumes vetch and pea. Here we describe the features of R. leguminosarum bv. viciae strain GB30, together with sequence and annotation. The 7,468,464 bp high-quality permanent draft genome is arranged in 78 scaffolds of 78 contigs containing 7,227 protein-coding genes and 75 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
- Authors:
-
- Maria Curie-Sklodowska Univ., Lublin (Poland)
- Murdoch Univ., (Western Australia)
- DOE Joint Genome Inst., Walnut Creek, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1256927
- Grant/Contract Number:
- AC02-05CH11231; AC52-07NA27344; AC02-06NA25396
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Rhizobia; Alphaproteobacteria; GEBA-RNB
Citation Formats
Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., and Reeve, Wayne. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0029-6.
Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., & Reeve, Wayne. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. United States. https://doi.org/10.1186/s40793-015-0029-6
Mazur, Andrzej, De Meyer, Sofie E., Tian, Rui, Wielbo, Jerzy, Zebracki, Kamil, Seshadri, Rekha, Reddy, T. B.K., Markowitz, Victor, Ivanova, Natalia N., Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos C., and Reeve, Wayne. Thu .
"High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland". United States. https://doi.org/10.1186/s40793-015-0029-6. https://www.osti.gov/servlets/purl/1256927.
@article{osti_1256927,
title = {High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland},
author = {Mazur, Andrzej and De Meyer, Sofie E. and Tian, Rui and Wielbo, Jerzy and Zebracki, Kamil and Seshadri, Rekha and Reddy, T. B.K. and Markowitz, Victor and Ivanova, Natalia N. and Pati, Amrita and Woyke, Tanja and Kyrpides, Nikos C. and Reeve, Wayne},
abstractNote = {We report that Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30 was isolated in Poland from a nodule recovered from the roots of Pisum sativum growing at Janow. GB30 is also an effective microsymbiont of the annual forage legumes vetch and pea. Here we describe the features of R. leguminosarum bv. viciae strain GB30, together with sequence and annotation. The 7,468,464 bp high-quality permanent draft genome is arranged in 78 scaffolds of 78 contigs containing 7,227 protein-coding genes and 75 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.},
doi = {10.1186/s40793-015-0029-6},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Thu Jul 16 00:00:00 EDT 2015},
month = {Thu Jul 16 00:00:00 EDT 2015}
}
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Works referencing / citing this record:
Electrophoretic profiles of lipopolysaccharides from Rhizobium strains nodulating Pisum sativum do not reflect phylogenetic relationships between these strains
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