3D TOCSY-HSQC NMR for Metabolic Flux Analysis Using Non-Uniform Sampling

Reardon, P. N.; Marean-Reardon, C. L.; Bukovec, M. A.; Coggins, B. E.; Isern, N. G.

doi:10.1021/acs.analchem.5b04535

Title: 3D TOCSY-HSQC NMR for Metabolic Flux Analysis Using Non-Uniform Sampling

Journal Article · Thu Feb 18 04:00:00 UTC 2016 · Analytical Chemistry

DOI: https://doi.org/10.1021/acs.analchem.5b04535 · OSTI ID:1239174

Reardon, P. N. ^[1]; Marean-Reardon, C. L. ^[2]; Bukovec, M. A. ^[3]; Coggins, B. E. ^[4]; Isern, N. G. ^[1]

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Boulevard, Richland, Washington 99352, United States
Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Boulevard, Richland, Washington 99352, United States, Department of Environmental Sciences, Washington State University, Richland, Washington 99354, United States
Department of Chemical, Paper and Biomedical Engineering, Miami University, Oxford, Ohio 45056, United States
Department of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710, United States

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Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI ID:: 1239174

Journal Information:: Analytical Chemistry, Journal Name: Analytical Chemistry Journal Issue: 5 Vol. 88; ISSN 0003-2700

Publisher:: American Chemical SocietyCopyright Statement

Country of Publication:: United States

Language:: English

References (28)

Accelerated NMR Spectroscopy by Using Compressed Sensing Kazimierczuk, Krzysztof; Orekhov, Vladislav Yu. Angewandte Chemie International Edition, Vol. 50, Issue 24 https://doi.org/10.1002/anie.201100370	journal	April 2011
13C Metabolic Flux Analysis Wiechert, Wolfgang Metabolic Engineering, Vol. 3, Issue 3 https://doi.org/10.1006/mben.2001.0187	journal	July 2001
In-Cell NMR Spectroscopy in Escherichia coli Robinson, Kirsten E.; Reardon, Patrick N.; Spicer, Leonard D. Methods in Molecular Biology https://doi.org/10.1007/978-1-61779-480-3_15	book	November 2011
NMRPipe: A multidimensional spectral processing system based on UNIX pipes Delaglio, Frank; Grzesiek, Stephan; Vuister, GeertenW. Journal of Biomolecular NMR, Vol. 6, Issue 3 https://doi.org/10.1007/BF00197809	journal	November 1995
Methods and advances in metabolic flux analysis: a mini-review Antoniewicz, Maciek R. Journal of Industrial Microbiology & Biotechnology, Vol. 42, Issue 3 https://doi.org/10.1007/s10295-015-1585-x	journal	January 2015
High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN Coggins, Brian E.; Zhou, Pei Journal of Biomolecular NMR, Vol. 42, Issue 4 https://doi.org/10.1007/s10858-008-9275-x	journal	October 2008
Re-examination of metabolic fluxes in Escherichia coli during anaerobic fermentation of glucose using 13C labeling experiments and 2-dimensional nuclear magnetic resonance (NMR) spectroscopy Choudhary, Madhuresh K.; Yoon, Jong Moon; Gonzalez, Ramon Biotechnology and Bioprocess Engineering, Vol. 16, Issue 3 https://doi.org/10.1007/s12257-010-0449-5	journal	June 2011
Use of CLEAN in conjunction with selective data sampling for 2D NMR experiments Barna, Jennifer C. J.; Tan, Sze M.; Lade, Ernest D. Journal of Magnetic Resonance (1969), Vol. 78, Issue 2 https://doi.org/10.1016/0022-2364(88)90277-6	journal	June 1988
The time dependence of coherence transfer in homonuclear isotropic mixing experiments Cavanagh, John; Chazin, Walter J.; Rance, Mark Journal of Magnetic Resonance (1969), Vol. 87, Issue 1 https://doi.org/10.1016/0022-2364(90)90089-R	journal	March 1990
Heteronuclear NMR Experiments Cavanagh, John; Fairbrother, Wayne J.; Palmer III, Arthur G. Protein NMR Spectroscopy: Principles and Practice https://doi.org/10.1016/B978-012164491-8/50009-9	book	January 2007
Sampling of intracellular metabolites for stationary and non-stationary 13C metabolic flux analysis in Escherichia coli Millard, Pierre; Massou, Stéphane; Wittmann, Christoph Analytical Biochemistry, Vol. 465 https://doi.org/10.1016/j.ab.2014.07.026	journal	November 2014
Spectral reconstruction methods in fast NMR: Reduced dimensionality, random sampling and maximum entropy Mobli, Mehdi; Stern, Alan S.; Hoch, Jeffrey C. Journal of Magnetic Resonance, Vol. 182, Issue 1 https://doi.org/10.1016/j.jmr.2006.06.007	journal	September 2006
Polar Fourier transforms of radially sampled NMR data Coggins, Brian E.; Zhou, Pei Journal of Magnetic Resonance, Vol. 182, Issue 1 https://doi.org/10.1016/j.jmr.2006.06.016	journal	September 2006
Randomization improves sparse sampling in multidimensional NMR Hoch, Jeffrey C.; Maciejewski, Mark W.; Filipovic, Blagoje Journal of Magnetic Resonance, Vol. 193, Issue 2 https://doi.org/10.1016/j.jmr.2008.05.011	journal	August 2008
Random sampling in multidimensional NMR spectroscopy Kazimierczuk, Krzysztof; Stanek, Jan; Zawadzka-Kazimierczuk, Anna Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 57, Issue 4 https://doi.org/10.1016/j.pnmrs.2010.07.002	journal	November 2010
Tandem mass spectrometry: A novel approach for metabolic flux analysis Choi, Jungik; Antoniewicz, Maciek R. Metabolic Engineering, Vol. 13, Issue 2 https://doi.org/10.1016/j.ymben.2010.11.006	journal	March 2011
13C-metabolic flux analysis of co-cultures: A novel approach Gebreselassie, Nikodimos A.; Antoniewicz, Maciek R. Metabolic Engineering, Vol. 31 https://doi.org/10.1016/j.ymben.2015.07.005	journal	September 2015
¹³ C-NMR, MS and metabolic flux balancing in biotechnology research Szyperski, Thomas Quarterly Reviews of Biophysics, Vol. 31, Issue 1 https://doi.org/10.1017/S0033583598003412	journal	February 1998
Fast Spatially Encoded 3D NMR Strategies for ¹³ C-Based Metabolic Flux Analysis Boisseau, Renaud; Charrier, Benoît; Massou, Stéphane Analytical Chemistry, Vol. 85, Issue 20 https://doi.org/10.1021/ac402155w	journal	September 2013
Generalized Reconstruction of n -D NMR Spectra from Multiple Projections: Application to the 5-D HACACONH Spectrum of Protein G B1 Domain Coggins, Brian E.; Venters, Ronald A.; Zhou, Pei Journal of the American Chemical Society, Vol. 126, Issue 4 https://doi.org/10.1021/ja039430q	journal	January 2004
Multidimensional NMR Spectroscopy for Protein Characterization and Assignment inside Cells Reardon, Patrick N.; Spicer, Leonard D. Journal of the American Chemical Society, Vol. 127, Issue 31 https://doi.org/10.1021/ja053145k	journal	August 2005
Ultrahigh-Resolution ¹ H− ¹³ C HSQC Spectra of Metabolite Mixtures Using Nonlinear Sampling and Forward Maximum Entropy Reconstruction Hyberts, Sven G.; Heffron, Gregory J.; Tarragona, Nestor G. Journal of the American Chemical Society, Vol. 129, Issue 16 https://doi.org/10.1021/ja068541x	journal	April 2007
Rapid Protein Global Fold Determination Using Ultrasparse Sampling, High-Dynamic Range Artifact Suppression, and Time-Shared NOESY Coggins, Brian E.; Werner-Allen, Jonathan W.; Yan, Anthony Journal of the American Chemical Society, Vol. 134, Issue 45 https://doi.org/10.1021/ja307445y	journal	September 2012
Engineering dynamic pathway regulation using stress-response promoters Dahl, Robert H.; Zhang, Fuzhong; Alonso-Gutierrez, Jorge Nature Biotechnology, Vol. 31, Issue 11 https://doi.org/10.1038/nbt.2689	journal	October 2013
13C-based metabolic flux analysis Zamboni, Nicola; Fendt, Sarah-Maria; Rühl, Martin Nature Protocols, Vol. 4, Issue 6 https://doi.org/10.1038/nprot.2009.58	journal	May 2009
Structure of an HIV-1-neutralizing antibody target, the lipid-bound gp41 envelope membrane proximal region trimer Reardon, P. N.; Sage, H.; Dennison, S. M. Proceedings of the National Academy of Sciences, Vol. 111, Issue 4 https://doi.org/10.1073/pnas.1309842111	journal	January 2014
Biosynthetically Directed Fractional 13C-labeling of Proteinogenic Amino Acids. An Efficient Analytical Tool to Investigate Intermediary Metabolism Szyperski, Thomas European Journal of Biochemistry, Vol. 232, Issue 2 https://doi.org/10.1111/j.1432-1033.1995.tb20829.x	journal	September 1995
MetaboMiner – semi-automated identification of metabolites from 2D NMR spectra of complex biofluids Xia, Jianguo; Bjorndahl, Trent C.; Tang, Peter BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-507	journal	January 2008

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