Challenges and solutions for the analysis of in situ , in crystallo micro-spectrophotometric data
Abstract
Combining macromolecular crystallography with in crystallo micro-spectrophotometry yields valuable complementary information on the sample, including the redox states of metal cofactors, the identification of bound ligands and the onset and strength of undesired photochemistry, also known as radiation damage. However, the analysis and processing of the resulting data differs significantly from the approaches used for solution spectrophotometric data. The varying size and shape of the sample, together with the suboptimal sample environment, the lack of proper reference signals and the general influence of the X-ray beam on the sample have to be considered and carefully corrected for. In the present article, we discuss how to characterize and treat these sample-dependent artefacts in a reproducible manner and we demonstrate the SLS-APE in situ, in crystallo optical spectroscopy data-analysis toolbox.
- Authors:
-
- Paul Scherrer Inst. (PSI), Villigen (Switzerland). Swiss Light Source
- Univ. of Essex, Colchester (United Kingdom)
- European Molecular Biology Lab. (EMBL), Hamburg (Germany)
- Brookhaven National Lab. (BNL), Upton, NY (United States). Photon Sciences Directorate
- Publication Date:
- Research Org.:
- Brookhaven National Laboratory (BNL), Upton, NY (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1228946
- Report Number(s):
- BNL-111021-2015-JA
Journal ID: ISSN 1399-0047; ABCRE6
- Grant/Contract Number:
- SC00112704; 20111166; 2370
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Acta Crystallographica. Section D: Biological Crystallography (Online)
- Additional Journal Information:
- Journal Name: Acta Crystallographica. Section D: Biological Crystallography (Online); Journal Volume: 71; Journal Issue: 1; Journal ID: ISSN 1399-0047
- Publisher:
- International Union of Crystallography
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 47 OTHER INSTRUMENTATION; micro-spectrophotometer; UV-visible absorption; Raman spectroscopy; single-crystal spectroscopy; software toolbox; data analysis; background correction
Citation Formats
Dworkowski, Florian S. N., Hough, Michael A., Pompidor, Guillaume, and Fuchs, Martin R. Challenges and solutions for the analysis of in situ , in crystallo micro-spectrophotometric data. United States: N. p., 2015.
Web. doi:10.1107/S1399004714015107.
Dworkowski, Florian S. N., Hough, Michael A., Pompidor, Guillaume, & Fuchs, Martin R. Challenges and solutions for the analysis of in situ , in crystallo micro-spectrophotometric data. United States. https://doi.org/10.1107/S1399004714015107
Dworkowski, Florian S. N., Hough, Michael A., Pompidor, Guillaume, and Fuchs, Martin R. Thu .
"Challenges and solutions for the analysis of in situ , in crystallo micro-spectrophotometric data". United States. https://doi.org/10.1107/S1399004714015107. https://www.osti.gov/servlets/purl/1228946.
@article{osti_1228946,
title = {Challenges and solutions for the analysis of in situ , in crystallo micro-spectrophotometric data},
author = {Dworkowski, Florian S. N. and Hough, Michael A. and Pompidor, Guillaume and Fuchs, Martin R.},
abstractNote = {Combining macromolecular crystallography with in crystallo micro-spectrophotometry yields valuable complementary information on the sample, including the redox states of metal cofactors, the identification of bound ligands and the onset and strength of undesired photochemistry, also known as radiation damage. However, the analysis and processing of the resulting data differs significantly from the approaches used for solution spectrophotometric data. The varying size and shape of the sample, together with the suboptimal sample environment, the lack of proper reference signals and the general influence of the X-ray beam on the sample have to be considered and carefully corrected for. In the present article, we discuss how to characterize and treat these sample-dependent artefacts in a reproducible manner and we demonstrate the SLS-APE in situ, in crystallo optical spectroscopy data-analysis toolbox.},
doi = {10.1107/S1399004714015107},
journal = {Acta Crystallographica. Section D: Biological Crystallography (Online)},
number = 1,
volume = 71,
place = {United States},
year = {Thu Jan 01 00:00:00 EST 2015},
month = {Thu Jan 01 00:00:00 EST 2015}
}
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