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Title: Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Abstract

Here, we report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.

Authors:
 [1];  [2];  [2];  [3];  [2];  [2];  [4];  [2];  [2];  [5];  [2]; ; ; ; ; ; ; ; ; more »; ;  [6]; ; ; « less
+ Show Author Affiliations
  1. Montana State Univ., Bozeman, MT (United States).Center for Biofiolm Engineering
  2. DOE Joint Genome Institute, Walnut Creek, CA (United States)
  3. DOE Joint Genome Institute, Walnut Creek, CA (United States); St. Petersburg Academic University, St. Petersburg (Russia). Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russian Federation, and Algorithmic Biology Lab.
  4. DOE Joint Genome Institute, Walnut Creek, CA (United States); Synthetic Genomics, La Jolla, CA (United States)
  5. DOE Joint Genome Institute, Walnut Creek, CA (United States); HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States). Genome Sequencing Center
  6. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); Work for Others (WFO)
OSTI Identifier:
1184919
Alternate Identifier(s):
OSTI ID: 1215522; OSTI ID: 1265321; OSTI ID: 1327767
Report Number(s):
PNNL-SA-107352
KP1702030
Grant/Contract Number:  
AC05-76RL01830; AC02-05CH11231; AC05-00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Bacteriology, 3(1):Article No. e01449-14
Additional Journal Information:
Journal Name: Journal of Bacteriology, 3(1):Article No. e01449-14; Journal Volume: 3; Journal Issue: 1
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE WASTES FROM NUCLEAR FACILITIES; genome sequence; anaeromyxobacter; anaerobic; metal-reducing bacterium; 54 ENVIRONMENTAL SCIENCES; Fw109-5; Metal-Reducing

Citation Formats

Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla, Barry, Kerrie W., Glavina del Rio, T., Dalin, Eileen, Tice, Hope, Pitluck, S., Sims, David R., Brettin, T., Bruce, David, Detter, J. C., Han, Cliff F., Schmutz, Jeremy, Larimer, F., Land, M., Hauser, L., Kyrpides, Nikos C., Lykidis, Athanasios, Richardson, P. M., Beliaev, Alex S., Sanford, Robert A., Loeffler, Frank E., and Fields, Matthew W. Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment. United States: N. p., 2015. Web. doi:10.1128/genomeA.01449-14.
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Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla, Barry, Kerrie W., Glavina del Rio, T., Dalin, Eileen, Tice, Hope, Pitluck, S., Sims, David R., Brettin, T., Bruce, David, Detter, J. C., Han, Cliff F., Schmutz, Jeremy, Larimer, F., Land, M., Hauser, L., Kyrpides, Nikos C., Lykidis, Athanasios, Richardson, P. M., Beliaev, Alex S., Sanford, Robert A., Loeffler, Frank E., & Fields, Matthew W. Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment. United States. https://doi.org/10.1128/genomeA.01449-14
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Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla, Barry, Kerrie W., Glavina del Rio, T., Dalin, Eileen, Tice, Hope, Pitluck, S., Sims, David R., Brettin, T., Bruce, David, Detter, J. C., Han, Cliff F., Schmutz, Jeremy, Larimer, F., Land, M., Hauser, L., Kyrpides, Nikos C., Lykidis, Athanasios, Richardson, P. M., Beliaev, Alex S., Sanford, Robert A., Loeffler, Frank E., and Fields, Matthew W. Thu . "Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment". United States. https://doi.org/10.1128/genomeA.01449-14. https://www.osti.gov/servlets/purl/1184919.
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@article{osti_1184919,
title = {Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment},
author = {Hwang, C. and Copeland, A. and Lucas, Susan and Lapidus, Alla and Barry, Kerrie W. and Glavina del Rio, T. and Dalin, Eileen and Tice, Hope and Pitluck, S. and Sims, David R. and Brettin, T. and Bruce, David and Detter, J. C. and Han, Cliff F. and Schmutz, Jeremy and Larimer, F. and Land, M. and Hauser, L. and Kyrpides, Nikos C. and Lykidis, Athanasios and Richardson, P. M. and Beliaev, Alex S. and Sanford, Robert A. and Loeffler, Frank E. and Fields, Matthew W.},
abstractNote = {Here, we report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.},
doi = {10.1128/genomeA.01449-14},
journal = {Journal of Bacteriology, 3(1):Article No. e01449-14},
number = 1,
volume = 3,
place = {United States},
year = {Thu Jan 22 00:00:00 EST 2015},
month = {Thu Jan 22 00:00:00 EST 2015}
}
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Journal Article:
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Publisher's Version of Record
https://doi.org/10.1128/genomeA.01449-14
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Works referenced in this record:

In Situ Bioreduction of Uranium (VI) to Submicromolar Levels and Reoxidation by Dissolved Oxygen
journal, August 2007

  • Wu, Wei-Min; Carley, Jack; Luo, Jian
  • Environmental Science & Technology, Vol. 41, Issue 16
  • DOI: 10.1021/es062657b

Diversity and Distribution of Anaeromyxobacter Strains in a Uranium-Contaminated Subsurface Environment with a Nonuniform Groundwater Flow
journal, April 2009

  • Thomas, S. H.; Padilla-Crespo, E.; Jardine, P. M.
  • Applied and Environmental Microbiology, Vol. 75, Issue 11
  • DOI: 10.1128/AEM.02473-08

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010

  • Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1457

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
journal, December 2007

  • Markowitz, V. M.; Szeto, E.; Palaniappan, K.
  • Nucleic Acids Research, Vol. 36, Issue Database
  • DOI: 10.1093/nar/gkm846

Characterization and Description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an Aryl-Halorespiring Facultative Anaerobic Myxobacterium
journal, February 2002

Characterization of Fe(III) Reduction by Chlororespiring Anaeromxyobacter dehalogenans
journal, May 2003

Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales
journal, May 2003

Uranium(VI) Reduction by Anaeromyxobacter dehalogenans Strain 2CP-C
journal, May 2006

Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C
journal, February 2009

Release of Arsenic from Soil by a Novel Dissimilatory Arsenate-Reducing Bacterium, Anaeromyxobacter sp. Strain PSR-1
journal, May 2013

  • Kudo, Keitaro; Yamaguchi, Noriko; Makino, Tomoyuki
  • Applied and Environmental Microbiology, Vol. 79, Issue 15
  • DOI: 10.1128/AEM.00693-13

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils
journal, November 2012

  • Sanford, R. A.; Wagner, D. D.; Wu, Q.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 48
  • DOI: 10.1073/pnas.1211238109
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    Bioremediation through microbes: systems biology and metabolic engineering approach
    journal, September 2018

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