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Title: Structure and selectivity in bestrophin ion channels

Abstract

Human bestrophin 1 (hBest1) is a calcium-activated chloride channel from the retinal pigment epithelium, where it can suffer mutations associated with vitelliform macular degeneration, or Best disease. We describe the structure of a bacterial homolog (KpBest) of hBest1 and functional characterizations of both channels. KpBest is a pentamer that forms a five-helix transmembrane pore, closed by three rings of conserved hydrophobic residues, and has a cytoplasmic cavern with a restricted exit. From electrophysiological analysis of structure-inspired mutations in KpBest and hBest1, we find a subtle control of ion selectivity in the bestrophins, including reversal of anion/cation selectivity, and dramatic activation by mutations at the exit restriction. Lastly, a homology model of hBest1 shows the locations of disease-causing mutations and suggests possible roles in regulation.

Authors:
 [1];  [2];  [3];  [3];  [3];  [1];  [4];  [4];  [5];  [6]
  1. Columbia Univ., New York, NY (United States). Dept. of Biochemistry and Molecular Biophysics
  2. Brookhaven National Lab. (BNL), Upton, NY (United States). New York Structural Biology Center, Synchrotron Beamlines
  3. New York Structural Biology Center, New York, NY (United States). New York Consortium on Membrane Protein Structure (NYCOMPS)
  4. Technische Univ. Munchen, Garching (Germany). Dept. of Informatics, Bioinformatics and Computational Biology
  5. Columbia Univ., New York, NY (United States). Dept. of Physiology and Cellular Biophysics
  6. Columbia Univ., New York, NY (United States). Dept. of Biochemistry and Molecular Biophysics; Brookhaven National Lab. (BNL), Upton, NY (United States). New York Structural Biology Center, Synchrotron Beamlines; New York Structural Biology Center, New York, NY (United States). New York Consortium on Membrane Protein Structure (NYCOMPS); Columbia Univ., New York, NY (United States). Dept. of Physiology and Cellular Biophysics
Publication Date:
Research Org.:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE; National Institutes of Health (NIH)
OSTI Identifier:
1165950
Report Number(s):
BNL-107097-2014-JA
Journal ID: ISSN 0036-8075; R&D Project: LS001
Grant/Contract Number:  
AC02-98CH10886; GM095315; GM107462
Resource Type:
Accepted Manuscript
Journal Name:
Science
Additional Journal Information:
Journal Volume: 346; Journal Issue: 6207; Journal ID: ISSN 0036-8075
Publisher:
AAAS
Country of Publication:
United States
Language:
English
Subject:
36 MATERIALS SCIENCE; Calcium-activated chloride channel; Crystal structure; Macular degeneration; Single-wavelength anomalous diffraction (SAD); Sodium channel

Citation Formats

Yang, Tingting, Liu, Qun, Kloss, Brian, Bruni, Renato, Kalathur, Ravi C., Guo, Youzhong, Kloppmann, Edda, Rost, Burkhard, Colecraft, Henry M., and Hendrickson, Wayne A. Structure and selectivity in bestrophin ion channels. United States: N. p., 2014. Web. doi:10.1126/science.1259723.
Yang, Tingting, Liu, Qun, Kloss, Brian, Bruni, Renato, Kalathur, Ravi C., Guo, Youzhong, Kloppmann, Edda, Rost, Burkhard, Colecraft, Henry M., & Hendrickson, Wayne A. Structure and selectivity in bestrophin ion channels. United States. https://doi.org/10.1126/science.1259723
Yang, Tingting, Liu, Qun, Kloss, Brian, Bruni, Renato, Kalathur, Ravi C., Guo, Youzhong, Kloppmann, Edda, Rost, Burkhard, Colecraft, Henry M., and Hendrickson, Wayne A. Thu . "Structure and selectivity in bestrophin ion channels". United States. https://doi.org/10.1126/science.1259723. https://www.osti.gov/servlets/purl/1165950.
@article{osti_1165950,
title = {Structure and selectivity in bestrophin ion channels},
author = {Yang, Tingting and Liu, Qun and Kloss, Brian and Bruni, Renato and Kalathur, Ravi C. and Guo, Youzhong and Kloppmann, Edda and Rost, Burkhard and Colecraft, Henry M. and Hendrickson, Wayne A.},
abstractNote = {Human bestrophin 1 (hBest1) is a calcium-activated chloride channel from the retinal pigment epithelium, where it can suffer mutations associated with vitelliform macular degeneration, or Best disease. We describe the structure of a bacterial homolog (KpBest) of hBest1 and functional characterizations of both channels. KpBest is a pentamer that forms a five-helix transmembrane pore, closed by three rings of conserved hydrophobic residues, and has a cytoplasmic cavern with a restricted exit. From electrophysiological analysis of structure-inspired mutations in KpBest and hBest1, we find a subtle control of ion selectivity in the bestrophins, including reversal of anion/cation selectivity, and dramatic activation by mutations at the exit restriction. Lastly, a homology model of hBest1 shows the locations of disease-causing mutations and suggests possible roles in regulation.},
doi = {10.1126/science.1259723},
journal = {Science},
number = 6207,
volume = 346,
place = {United States},
year = {Thu Sep 25 00:00:00 EDT 2014},
month = {Thu Sep 25 00:00:00 EDT 2014}
}

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Works referenced in this record:

Bestrophin, the product of the Best vitelliform macular dystrophy gene (VMD2), localizes to the basolateral plasma membrane of the retinal pigment epithelium
journal, October 2000

  • Marmorstein, A. D.; Marmorstein, L. Y.; Rayborn, M.
  • Proceedings of the National Academy of Sciences, Vol. 97, Issue 23
  • DOI: 10.1073/pnas.220402097

Identification of the gene responsible for Best macular dystrophy
journal, July 1998

  • Petrukhin, Konstantin; Koisti, Markus J.; Bakall, Benjamin
  • Nature Genetics, Vol. 19, Issue 3
  • DOI: 10.1038/915

The presence of bestrophin-1 modulates the Ca2+ recruitment from Ca2+ stores in the ER
journal, April 2010

  • Neussert, Rudgar; Müller, Claudia; Milenkovic, Vladimir M.
  • Pflügers Archiv - European Journal of Physiology, Vol. 460, Issue 1
  • DOI: 10.1007/s00424-010-0840-2

The spectrum of ocular phenotypes caused by mutations in the BEST1 gene
journal, May 2009


Missense Mutations in a Retinal Pigment Epithelium Protein, Bestrophin-1, Cause Retinitis Pigmentosa
journal, November 2009

  • Davidson, Alice E.; Millar, Ian D.; Urquhart, Jill E.
  • The American Journal of Human Genetics, Vol. 85, Issue 5
  • DOI: 10.1016/j.ajhg.2009.09.015

Bestrophins and retinopathies
journal, March 2010

  • Xiao, Qinghuan; Hartzell, H. Criss; Yu, Kuai
  • Pflügers Archiv - European Journal of Physiology, Vol. 460, Issue 2
  • DOI: 10.1007/s00424-010-0821-5

Molecular Physiology of Bestrophins: Multifunctional Membrane Proteins Linked to Best Disease and Other Retinopathies
journal, April 2008


Ten novel mutations in VMD2 associated with Best macular dystrophy (BMD) : MUTATIONS IN BRIEF
journal, September 2003

  • Krämer, Franziska; Mohr, Nicole; Kellner, Ulrich
  • Human Mutation, Vol. 22, Issue 5
  • DOI: 10.1002/humu.9189

Evaluation of the Best disease gene in patients with age-related macular degeneration and other maculopathies
journal, July 1999

  • Allikmets, R.; Seddon, Johanna M.; Bernstein, Paul S.
  • Human Genetics, Vol. 104, Issue 6
  • DOI: 10.1007/s004390050986

The vitelliform macular dystrophy protein defines a new family of chloride channels
journal, March 2002

  • Sun, Hui; Tsunenari, Takashi; Yau, King-Wai
  • Proceedings of the National Academy of Sciences, Vol. 99, Issue 6
  • DOI: 10.1073/pnas.052692999

Regulation of Bestrophin Cl Channels by Calcium: Role of the C Terminus
journal, November 2008

  • Xiao, Qinghuan; Prussia, Andrew; Yu, Kuai
  • The Journal of General Physiology, Vol. 132, Issue 6
  • DOI: 10.1085/jgp.200810056

Chloride Channel Activity of Bestrophin Mutants Associated with Mild or Late-Onset Macular Degeneration
journal, October 2007

  • Yu, Kuai; Qu, Zhiqiang; Cui, Yuanyuan
  • Investigative Opthalmology & Visual Science, Vol. 48, Issue 10
  • DOI: 10.1167/iovs.07-0301

The Bestrophin Mutation A243V, Linked to Adult-Onset Vitelliform Macular Dystrophy, Impairs Its Chloride Channel Function
journal, November 2006

  • Yu, Kuai; Cui, Yuanyuan; Hartzell, H. Criss
  • Investigative Opthalmology & Visual Science, Vol. 47, Issue 11
  • DOI: 10.1167/iovs.06-0524

Functional roles of bestrophins in ocular epithelia
journal, May 2009


Hydrodynamic properties of porcine bestrophin-1 in Triton X-100
journal, February 2006

  • Stanton, J. Brett; Goldberg, Andrew F. X.; Hoppe, George
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1758, Issue 2
  • DOI: 10.1016/j.bbamem.2006.01.024

Insertion and Topology of Normal and Mutant Bestrophin-1 in the Endoplasmic Reticulum Membrane
journal, November 2006

  • Milenkovic, Vladimir M.; Rivera, Andrea; Horling, Franziska
  • Journal of Biological Chemistry, Vol. 282, Issue 2
  • DOI: 10.1074/jbc.M607383200

Regulation of Bestrophins by Ca2+: A Theoretical and Experimental Study
journal, March 2009


TMEM16F Forms a Ca2+-Activated Cation Channel Required for Lipid Scrambling in Platelets during Blood Coagulation
journal, September 2012


Mouse Bestrophin-2 Is a Bona fide Cl Channel : Identification of a Residue Important in Anion Binding and Conduction
journal, March 2004

  • Qu, Zhiqiang; Fischmeister, Rodolphe; Hartzell, Criss
  • The Journal of General Physiology, Vol. 123, Issue 4
  • DOI: 10.1085/jgp.200409031

Determinants of Anion Permeation in the Second Transmembrane Domain of the Mouse Bestrophin-2 Chloride Channel
journal, September 2004

  • Qu, Zhiqiang; Hartzell, Criss
  • The Journal of General Physiology, Vol. 124, Issue 4
  • DOI: 10.1085/jgp.200409108

Ca 2+ -activated Cl Current from Human Bestrophin-4 in Excised Membrane Patches
journal, May 2006

  • Tsunenari, Takashi; Nathans, Jeremy; Yau, King-Wai
  • The Journal of General Physiology, Vol. 127, Issue 6
  • DOI: 10.1085/jgp.200609527

Rescue of Volume-regulated Anion Current by Bestrophin Mutants with Altered Charge Selectivity
journal, October 2008

  • Chien, Li-Ting; Hartzell, H. Criss
  • The Journal of General Physiology, Vol. 132, Issue 5
  • DOI: 10.1085/jgp.200810065

Homologue structure of the SLAC1 anion channel for closing stomata in leaves
journal, October 2010


Expression Cloning of TMEM16A as a Calcium-Activated Chloride Channel Subunit
journal, September 2008


TMEM16A confers receptor-activated calcium-dependent chloride conductance
journal, August 2008

  • Yang, Young Duk; Cho, Hawon; Koo, Jae Yeon
  • Nature, Vol. 455, Issue 7217
  • DOI: 10.1038/nature07313

Anion selectivity in biological systems
journal, January 1977


Focus on Molecules: Bestrophin (Best-1)
journal, October 2007


Structural genomics target selection for the New York consortium on membrane protein structure
journal, October 2009

  • Punta, Marco; Love, James; Handelman, Samuel
  • Journal of Structural and Functional Genomics, Vol. 10, Issue 4
  • DOI: 10.1007/s10969-009-9071-1

XDS
journal, January 2010

  • Kabsch, Wolfgang
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2
  • DOI: 10.1107/S0907444909047337

Scaling and assessment of data quality
journal, December 2005

  • Evans, Philip
  • Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1, p. 72-82
  • DOI: 10.1107/S0907444905036693

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

PROCHECK: a program to check the stereochemical quality of protein structures
journal, April 1993

  • Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.
  • Journal of Applied Crystallography, Vol. 26, Issue 2
  • DOI: 10.1107/S0021889892009944

MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009

  • Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0907444909042073

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
journal, July 2005

  • Landau, M.; Mayrose, I.; Rosenberg, Y.
  • Nucleic Acids Research, Vol. 33, Issue Web Server
  • DOI: 10.1093/nar/gki370

Linking Crystallographic Model and Data Quality
journal, May 2012


Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen
journal, August 2020

  • Zacarias, Sónia; Temporão, Adriana; Carpentier, Philippe
  • JBIC Journal of Biological Inorganic Chemistry, Vol. 25, Issue 6
  • DOI: 10.1007/s00775-020-01814-y

Tmem16F forms a Ca2+-Activated Cation Channel Required for Lipid Scrambling in Platelets during Blood Coagulation
journal, January 2013


Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation
journal, February 2021


PHENIX: a comprehensive Python-based system for macromolecular structure solution.
text, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Apollo - University of Cambridge Repository
  • DOI: 10.17863/cam.45787

Works referencing / citing this record:

The lysosomal potassium channel TMEM175 adopts a novel tetrameric architecture
journal, July 2017

  • Lee, Changkeun; Guo, Jiangtao; Zeng, Weizhong
  • Nature, Vol. 547, Issue 7664
  • DOI: 10.1038/nature23269

Structural basis for conductance through TRIC cation channels
journal, May 2017


Succinate-acetate permease from Citrobacter koseri is an anion channel that unidirectionally translocates acetate
journal, March 2018


ATP activates bestrophin ion channels through direct interaction
journal, August 2018


Mutant Best1 Expression and Impaired Phagocytosis in an iPSC Model of Autosomal Recessive Bestrophinopathy
journal, March 2018


Investigation and Restoration of BEST1 Activity in Patient-derived RPEs with Dominant Mutations
journal, December 2019


Dual Ca2+-dependent gates in human Bestrophin1 underlie disease-causing mechanisms of gain-of-function mutations
journal, June 2019


Water and hydrophobic gates in ion channels and nanopores
journal, January 2018

  • Rao, Shanlin; Lynch, Charlotte I.; Klesse, Gianni
  • Faraday Discussions, Vol. 209
  • DOI: 10.1039/c8fd00013a

Distinct regions that control ion selectivity and calcium-dependent activation in the bestrophin ion channel
journal, November 2016

  • Vaisey, George; Miller, Alexandria N.; Long, Stephen B.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 47
  • DOI: 10.1073/pnas.1614688113

BEST1 gene therapy corrects a diffuse retina-wide microdetachment modulated by light exposure
journal, March 2018

  • Guziewicz, Karina E.; Cideciyan, Artur V.; Beltran, William A.
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 12
  • DOI: 10.1073/pnas.1720662115

The TMEM16A channel mediates the fast polyspermy block in Xenopus laevis
journal, July 2018

  • Wozniak, Katherine L.; Phelps, Wesley A.; Tembo, Maiwase
  • Journal of General Physiology, Vol. 150, Issue 9
  • DOI: 10.1085/jgp.201812071

A clearer image of the structure and regulation of bestrophin
journal, October 2018


BEST1 protein stability and degradation pathways differ between autosomal dominant Best disease and autosomal recessive bestrophinopathy accounting for the distinct retinal phenotypes
journal, February 2018

  • Milenkovic, Andrea; Milenkovic, Vladimir M.; Wetzel, Christian H.
  • Human Molecular Genetics, Vol. 27, Issue 9
  • DOI: 10.1093/hmg/ddy070

A bestrophin-like protein modulates the proton motive force across the thylakoid membrane in Arabidopsis : Involvement of AtBest in fine-tuning of photosynthesis
journal, April 2016

  • Duan, Zhikun; Kong, Fanna; Zhang, Lin
  • Journal of Integrative Plant Biology, Vol. 58, Issue 10
  • DOI: 10.1111/jipb.12475

Comparative Analyses of Transport Proteins Encoded within the Genomes of Bdellovibrio bacteriovorus HD100 and Bdellovibrio exovorus JSS
journal, January 2017

  • Heidari Tajabadi, Fereshteh; Medrano-Soto, Arturo; Ahmadzadeh, Masoud
  • Journal of Molecular Microbiology and Biotechnology, Vol. 27, Issue 6
  • DOI: 10.1159/000484563

The Y227N mutation affects bestrophin-1 protein stability and impairs sperm function in a mouse model of Best vitelliform macular dystrophy
journal, June 2019

  • Milenkovic, Andrea; Schmied, Denise; Tanimoto, Naoyuki
  • Biology Open, Vol. 8, Issue 7
  • DOI: 10.1242/bio.041335

Diverse CO2-Induced Responses in Physiology and Gene Expression among Eukaryotic Phytoplankton
journal, December 2017

  • Hennon, Gwenn M. M.; Hernández Limón, María D.; Haley, Sheean T.
  • Frontiers in Microbiology, Vol. 8
  • DOI: 10.3389/fmicb.2017.02547

Chloride Channels in Astrocytes: Structure, Roles in Brain Homeostasis and Implications in Disease
journal, February 2019

  • Elorza-Vidal, Xabier; Gaitán-Peñas, Héctor; Estévez, Raúl
  • International Journal of Molecular Sciences, Vol. 20, Issue 5
  • DOI: 10.3390/ijms20051034

Distribution and Function of the Bestrophin-1 (Best1) Channel in the Brain
journal, June 2017


Structure-based analysis of CysZ-mediated cellular uptake of sulfate
journal, May 2018


Structural basis for ion selectivity in TMEM175 K+ channels
text, January 2020

  • Brunner, Janine D.; Jakob, Roman P.; Schulze, Tobias
  • eLife Sciences Publications Ltd.
  • DOI: 10.5167/uzh-186964

Diverse CO2-Induced Responses in Physiology and Gene Expression among Eukaryotic Phytoplankton
text, January 2017

  • Hennon, Gwenn M. M.; Hernández Limón, Maria De San Juan; Haley, Sheean
  • Columbia University
  • DOI: 10.7916/d8gb3dv4

Structure-based analysis of CysZ-mediated cellular uptake of sulfate
text, January 2018

  • Assur, Zahra; Liu, Qun; Clarke, Oliver B.
  • Columbia University
  • DOI: 10.7916/d8ms59sg

Dual Ca2+-Dependent Gates in Human Bestrophin1 Underlie Disease-Causing Mechanisms of Gain-Of-Function Mutations
journal, February 2020


Patient-Specific Mutations Impair Bestrophin1's Essential Role in Mediating Ca2+-Dependent CL- Currents in Human RPE
journal, February 2018


Structural basis for ion selectivity in TMEM175 K+ channels
journal, April 2020


Structural basis for conductance through TRIC cation channels
journal, May 2017


Investigation and Restoration of BEST1 Activity in Patient-derived RPEs with Dominant Mutations
journal, December 2019


Dual Ca2+-dependent gates in human Bestrophin1 underlie disease-causing mechanisms of gain-of-function mutations
journal, June 2019


The fast block to polyspermy: New insight into a century-old problem
journal, August 2018


A clearer image of the structure and regulation of bestrophin
journal, October 2018


Molecular mechanisms of gating in the calcium-activated chloride channel bestrophin
posted_content, October 2018

  • Miller, Alexandria N.; Vaisey, George; Long, Stephen B.
  • bioRxiv
  • DOI: 10.1101/432682

Multimodal Imaging in Best Vitelliform Macular Dystrophy
journal, May 2019

  • Lima de Carvalho, Jose Ronaldo; Paavo, Maarjaliis; Chen, Lijuan
  • Investigative Opthalmology & Visual Science, Vol. 60, Issue 6
  • DOI: 10.1167/iovs.19-26571

Direct interaction with 14–3-3γ promotes surface expression of Best1 channel in astrocyte
journal, November 2017


Underlying Genes Involved in Atherosclerotic Macrophages: Insights from Microarray Data Mining
journal, December 2019

  • Wang, Weihan; Zhang, Kai; Zhang, Hao
  • Medical Science Monitor, Vol. 25
  • DOI: 10.12659/msm.917068

Chloride Channels in Astrocytes: Structure, Roles in Brain Homeostasis and Implications in Disease
journal, February 2019

  • Elorza-Vidal, Xabier; Gaitán-Peñas, Héctor; Estévez, Raúl
  • International Journal of Molecular Sciences, Vol. 20, Issue 5
  • DOI: 10.3390/ijms20051034