Constructs and systems and methods for engineering a CO2 fixing photorespiratory by-pass pathway
Abstract
Methods and compositions to introduce a synthetic pathway based on the 3-hydroxypropionate bicycle into an organism such as the model cyanobacterium, Synechococcus elongatus sp. PCC 7942. The heterologously expressed pathway acts as a photorespiratory bypass as well as an additional carbon fixation cycle orthogonal to the endogenous Calvin-Benson cycle. We demonstrate the function of all six introduced enzymes, which not only has implications on increasing net-photosynthetic productivity, but also key enzymes in the pathway are involved in high-value products that are of biotechnological interest, such as 3-hydroxypropionate.
- Inventors:
- Issue Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1600295
- Patent Number(s):
- 10480003
- Application Number:
- 15/230,332
- Assignee:
- The Regents of the University of California (Oakland, CA)
- Patent Classifications (CPCs):
-
C - CHEMISTRY C12 - BIOCHEMISTRY C12N - MICROORGANISMS OR ENZYMES
Y - NEW / CROSS SECTIONAL TECHNOLOGIES Y02 - TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE Y02P - CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- DOE Contract Number:
- AC02-05CH11231
- Resource Type:
- Patent
- Resource Relation:
- Patent File Date: 08/05/2016
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 42 ENGINEERING
Citation Formats
Kerfeld, Cheryl A., Shih, Patrick, Zarzycki, Jan, and Niyogi, Krishna K. Constructs and systems and methods for engineering a CO2 fixing photorespiratory by-pass pathway. United States: N. p., 2019.
Web.
Kerfeld, Cheryl A., Shih, Patrick, Zarzycki, Jan, & Niyogi, Krishna K. Constructs and systems and methods for engineering a CO2 fixing photorespiratory by-pass pathway. United States.
Kerfeld, Cheryl A., Shih, Patrick, Zarzycki, Jan, and Niyogi, Krishna K. Tue .
"Constructs and systems and methods for engineering a CO2 fixing photorespiratory by-pass pathway". United States. https://www.osti.gov/servlets/purl/1600295.
@article{osti_1600295,
title = {Constructs and systems and methods for engineering a CO2 fixing photorespiratory by-pass pathway},
author = {Kerfeld, Cheryl A. and Shih, Patrick and Zarzycki, Jan and Niyogi, Krishna K.},
abstractNote = {Methods and compositions to introduce a synthetic pathway based on the 3-hydroxypropionate bicycle into an organism such as the model cyanobacterium, Synechococcus elongatus sp. PCC 7942. The heterologously expressed pathway acts as a photorespiratory bypass as well as an additional carbon fixation cycle orthogonal to the endogenous Calvin-Benson cycle. We demonstrate the function of all six introduced enzymes, which not only has implications on increasing net-photosynthetic productivity, but also key enzymes in the pathway are involved in high-value products that are of biotechnological interest, such as 3-hydroxypropionate.},
doi = {},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Tue Nov 19 00:00:00 EST 2019},
month = {Tue Nov 19 00:00:00 EST 2019}
}
Works referenced in this record:
Rewiring hydrogenase-dependent redox circuits in cyanobacteria
journal, February 2011
- Ducat, D. C.; Sachdeva, G.; Silver, P. A.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 10
Expression of the sub-pathways of the Chloroflexus aurantiacus 3-hydroxypropionate carbon fixation bicycle in E. coli: Toward horizontal transfer of autotrophic growth
journal, March 2013
- Mattozzi, Matthew d.; Ziesack, Marika; Voges, Mathias J.
- Metabolic Engineering, Vol. 16
Methods and systems for chemoautotrophic production of organic compounds
patent, January 2013
- Fischer, Curt R.; Che, Austin J.; Shetty, Reshma
- US Patent Document 8,349,587
The Plant-Like C2 Glycolate Cycle and the Bacterial-Like Glycerate Pathway Cooperate in Phosphoglycolate Metabolism in Cyanobacteria
journal, July 2006
- Eisenhut, Marion; Kahlon, Shira; Hasse, Dirk
- Plant Physiology, Vol. 142, Issue 1
Malonyl-Coenzyme A Reductase from Chloroflexus aurantiacus, a Key Enzyme of the 3-Hydroxypropionate Cycle for Autotrophic CO2 Fixation
journal, May 2002
- Hugler, M.; Menendez, C.; Schagger, H.
- Journal of Bacteriology, Vol. 184, Issue 9, p. 2404-2410
The Compartmentation of Acetyl-Coenzyme A Carboxylase in Plants
journal, June 1995
- Sasaki, Y.; Konishi, T.; Nagano, Y.
- Plant Physiology, Vol. 108, Issue 2
Interactions between Plasma Membrane Aquaporins Modulate Their Water Channel Activity
journal, December 2003
- Fetter, Karolina; Van Wilder, Valérie; Moshelion, Menachem
- The Plant Cell, Vol. 16, Issue 1
Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement
journal, May 2011
- Blankenship, R. E.; Tiede, D. M.; Barber, J.
- Science, Vol. 332, Issue 6031, p. 805-809
Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana
journal, April 2007
- Kebeish, Rashad; Niessen, Markus; Thiruveedhi, Krishnaveni
- Nature Biotechnology, Vol. 25, Issue 5
Biosynthetic pathway for poly(3-Hydroxypropionate) in recombinant Escherichia coli
journal, August 2012
- Wang, Qi; Liu, Changshui; Xian, Mo
- Journal of Microbiology, Vol. 50, Issue 4
The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
journal, January 2013
- Zarzycki, Jan; Kerfeld, Cheryl A.
- BMC Structural Biology, Vol. 13, Issue 1
Estimating the rate of photorespiration in leaves
journal, May 1988
- Sharkey, Thomas D.
- Physiologia Plantarum, Vol. 73, Issue 1
Manufacturing Molecules Through Metabolic Engineering
journal, December 2010
- Keasling, Jay D.
- Science, Vol. 330, Issue 6009, p. 1355-1358
Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape
journal, February 2010
- Savir, Yonatan; Noor, Elad; Milo, Ron
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 8
Coassimilation of Organic Substrates via the Autotrophic 3-Hydroxypropionate Bi-Cycle in Chloroflexus aurantiacus
journal, July 2011
- Zarzycki, Jan; Fuchs, Georg
- Applied and Environmental Microbiology, Vol. 77, Issue 17, p. 6181-6188
Use of deoxyinosine-containing primers vs degenerate primers for polymerase chain reaction based on ambiguous sequence information
journal, April 1994
- Rossolini, Gian Maria; Cresti, Stefania; Ingianni, Angela
- Molecular and Cellular Probes, Vol. 8, Issue 2, p. 91-98
An alternative approach to deoxyoligonucleotides as hybridization probes by insertion of deoxyinosine at ambiguous codon positions.
journal, March 1985
- Ohtsuka, E.; Matsuki, S.; Ikehara, M.
- Journal of Biological Chemistry, Vol. 260, Issue 5
Anaerobic Digestion of Lignocellulosic Wastes by Rumen Microorganisms: Chemical and Kinetic Analyses
book, October 2010
- Hu, Zhen-Hu; Yue, Zheng-Bo; Liu, Shao-Yang
- Environmental Anaerobic Technology
BglBricks: A flexible standard for biological part assembly
journal, January 2010
- Anderson, J. Christopher; Dueber, John E.; Leguia, Mariana
- Journal of Biological Engineering, Vol. 4, Issue 1
Introduction of a Synthetic CO 2 -fixing Photorespiratory Bypass into a Cyanobacterium
journal, February 2014
- Shih, Patrick M.; Zarzycki, Jan; Niyogi, Krishna K.
- Journal of Biological Chemistry, Vol. 289, Issue 14
The N-myristoylated Rab-GTPase m-Rabmc is involved in post-Golgi trafficking events to the lytic vacuole in plant cells
journal, February 2004
- Bolte, Susanne; Brown, Spencer; Satiat-Jeunemaitre, Béatrice
- Journal of Cell Science, Vol. 117, Issue 6
Transgenic Introduction of a Glycolate Oxidative Cycle into A. thaliana Chloroplasts Leads to Growth Improvement
journal, January 2012
- Maier, Alexandra; Fahnenstich, Holger; von Caemmerer, Susanne
- Frontiers in Plant Science, Vol. 3
Studies of Propionate Toxicity in Salmonella enterica Identify 2-Methylcitrate as a Potent Inhibitor of Cell Growth
journal, March 2001
- Horswill, Alexander R.; Dudding, Andrea R.; Escalante-Semerena, Jorge C.
- Journal of Biological Chemistry, Vol. 276, Issue 22
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
journal, September 2006
- Martín, Héctor García; Ivanova, Natalia; Kunin, Victor
- Nature Biotechnology, Vol. 24, Issue 10
Spectral Profiling for the Simultaneous Observation of Four Distinct Fluorescent Proteins and Detection of Protein-Protein Interaction via Fluorescence Resonance Energy Transfer in Tobacco Leaf Nuclei
journal, July 2002
- Kato, Naohiro; Pontier, Dominique; Lam, Eric
- Plant Physiology, Vol. 129, Issue 3
Cyanobacterial-based approaches to improving photosynthesis in plants
journal, October 2012
- Zarzycki, Jan; Axen, Seth D.; Kinney, James N.
- Journal of Experimental Botany, Vol. 64, Issue 3
Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized
journal, April 2006
- Tcherkez, G. G. B.; Farquhar, G. D.; Andrews, T. J.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 19
Enhanced evolutionary PCR using oligonucleotides with inosine at the 3′-terminus
journal, January 1991
- Batzer, Mark A.; Carlton, James E.; Deininger, Prescott L.
- Nucleic Acids Research, Vol. 19, Issue 18, p. 5081-5081
Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2 fixation cycle in Chloroflexus aurantiacus
journal, December 2009
- Zarzycki, Jan; Brecht, Volker; Müller, Michael
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 50, p. 21317-21322
Enrichment, Phylogenetic Analysis and Detection of a Bacterium That Performs Enhanced Biological Phosphate Removal in Activated Sludge
journal, September 1999
- Hesselmann, Rolf P. X.; Werlen, Christoph; Hahn, Dittmar
- Systematic and Applied Microbiology, Vol. 22, Issue 3
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
journal, January 2012
- Nogales, J.; Gudmundsson, S.; Knight, E. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 7
Specialized Techniques for Site-Directed Mutagenesis in Cyanobacteria
book, January 2007
- Clerico, Eugenia M.; Ditty, Jayna L.; Golden, Susan S.
- Methods in Molecular Biology
The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants
journal, October 2008
- Eisenhut, M.; Ruth, W.; Haimovich, M.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 44
Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?
journal, October 2011
- Fuchs, Georg
- Annual Review of Microbiology, Vol. 65, Issue 1
Engineering Cyanobacteria To Synthesize and Export Hydrophilic Products
journal, September 2010
- Niederholtmeyer, Henrike; Wolfstädter, Bernd T.; Savage, David F.
- Applied and Environmental Microbiology, Vol. 76, Issue 17
Design and Implementation of Novel and/or Enhanced Bacterial Microcompartments for Customizing Metabolis
patent-application, August 2012
- Kerfeld, Cheryl A.; Laque, Dominique
- US Patent Application 13/367260; 20120210459
glc locus of Escherichia coli: characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein.
journal, January 1996
- Pellicer, M. T.; Badía, J.; Aguilar, J.
- Journal of bacteriology, Vol. 178, Issue 7
Propionyl-Coenzyme A Synthase from Chloroflexus aurantiacus, a Key Enzyme of the 3-Hydroxypropionate Cycle for Autotrophic CO2 Fixation
journal, January 2002
- Alber, Birgit E.; Fuchs, Georg
- Journal of Biological Chemistry, Vol. 277, Issue 14, p. 12137-12143