Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR

Brandizzi, Federica

doi:10.82250/3003594

Title: Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR

Dataset
Other Related Research

Abstract

Sequencing reads archived here are part of a project studying natural variation in ER stress responses in Arabidopsis reported in Pastor-Cantizano et al. 2024. The project focused on contrasting alleles derived from Na-1 (tolerant) and Est-0 (susceptible) accessions when exposed to a ER stress inducer. These accession were crossed, F3 progeny were phenotyped, and the top and bottom 10% of relative performance under ER stress (42 individuals from each tail) were pooled and sequenced. Candidate genomic regions were identified by looking for allele frequency differences among the two pools in a standard QTL-seq approach

Authors:

Brandizzi, Federica

GLBRC - Michigan State University

Publication Date:: Wed Jun 19 00:00:00 EDT 2024

DOE Contract Number:: SC0018409

Research Org.:: Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Subject:: QTL; UPR; WGS; programmed cell death

OSTI Identifier:: 3003594

DOI:: https://doi.org/10.82250/3003594

Citation Formats


                    Brandizzi, Federica. Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR.  United States: N. p., 2024. 
        Web.  doi:10.82250/3003594.

Copy to clipboard


                    Brandizzi, Federica. Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR.  United States.  doi:https://doi.org/10.82250/3003594

Copy to clipboard


                    Brandizzi, Federica. 2024.  
"Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR".  United States.  doi:https://doi.org/10.82250/3003594.  https://www.osti.gov/servlets/purl/3003594. Pub date:Wed Jun 19 00:00:00 EDT 2024

Copy to clipboard


                    
@article{osti_3003594,

  title        = {Population genomics identify the requirement of BAP2 in the sufficiency of IRE1 in the UPR},

  author       = {Brandizzi, Federica},

  abstractNote = {Sequencing reads archived here are part of a project studying natural variation in ER stress responses in Arabidopsis reported in Pastor-Cantizano et al. 2024. The project focused on contrasting alleles derived from Na-1 (tolerant) and Est-0 (susceptible) accessions when exposed to a ER stress inducer. These accession were crossed, F3 progeny were phenotyped, and the top and bottom 10% of relative performance under ER stress (42 individuals from each tail) were pooled and sequenced. Candidate genomic regions were identified by looking for allele frequency differences among the two pools in a standard QTL-seq approach},

  doi          = {10.82250/3003594},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Wed Jun 19 00:00:00 EDT 2024},

  month        = {Wed Jun 19 00:00:00 EDT 2024}

}

Copy to clipboard

Dataset:

View Dataset

DOI: https://doi.org/10.82250/3003594

Save / Share:

Export Metadata

Save to My Library

Similar records in DOE Data Explorer and OSTI.GOV collections:

Materials Data on BaP2 by Materials Project

Dataset

BaP2 crystallizes in the monoclinic P2_1/c space group. The structure is three-dimensional. there are two inequivalent Ba2+ sites. In the first Ba2+ site, Ba2+ is bonded in a 8-coordinate geometry to eight P1- atoms. There are a spread of Ba–P bond distances ranging from 3.28–3.44 Å. In the second Ba2+ site, Ba2+ is bonded to six P1- atoms to form BaP6 octahedra that share corners with four equivalent PBa4P2 octahedra. The corner-sharing octahedra tilt angles range from 30–82°. There are four shorter (3.28 Å) and two longer (3.31 Å) Ba–P bond lengths. There are three inequivalent P1- sites. In themore »« less
Materials Data on BaP2(HO2)4 by Materials Project

Dataset

Ba(H2PO4)2 crystallizes in the orthorhombic Pccn space group. The structure is three-dimensional. Ba2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ba–O bond distances ranging from 2.71–2.95 Å. P5+ is bonded in a tetrahedral geometry to four O2- atoms. There are a spread of P–O bond distances ranging from 1.51–1.60 Å. There are two inequivalent H1+ sites. In the first H1+ site, H1+ is bonded in a linear geometry to two O2- atoms. There is one shorter (1.02 Å) and one longer (1.58 Å) H–O bond length. In the second H1+ site, H1+more »« less
Materials Data on BaP2(HO2)4 by Materials Project

Dataset

Ba(H2PO4)2 crystallizes in the triclinic P-1 space group. The structure is three-dimensional. Ba2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ba–O bond distances ranging from 2.61–3.17 Å. There are two inequivalent P5+ sites. In the first P5+ site, P5+ is bonded in a tetrahedral geometry to four O2- atoms. There are a spread of P–O bond distances ranging from 1.51–1.63 Å. In the second P5+ site, P5+ is bonded in a tetrahedral geometry to four O2- atoms. There are a spread of P–O bond distances ranging from 1.50–1.66 Å. There are fivemore »« less
Materials Data on BaP2(HO4)2 by Materials Project

Dataset

BaP2(HO4)2 crystallizes in the orthorhombic Pccn space group. The structure is three-dimensional. Ba is bonded in a 8-coordinate geometry to eight O atoms. There are a spread of Ba–O bond distances ranging from 2.73–2.91 Å. P is bonded in a tetrahedral geometry to four O atoms. There are a spread of P–O bond distances ranging from 1.51–1.60 Å. H is bonded in a distorted single-bond geometry to two O atoms. There is one shorter (1.00 Å) and one longer (1.69 Å) H–O bond length. There are four inequivalent O sites. In the first O site, O is bonded in amore »« less
Materials Data on BaP2(HO)4 by Materials Project

Dataset

Ba(H2PO2)2 crystallizes in the orthorhombic Ccce space group. The structure is two-dimensional and consists of two Ba(H2PO2)2 sheets oriented in the (0, 1, 0) direction. Ba2+ is bonded in a 8-coordinate geometry to eight equivalent O2- atoms. There are four shorter (2.82 Å) and four longer (2.83 Å) Ba–O bond lengths. P1+ is bonded in a distorted tetrahedral geometry to two equivalent H1+ and two equivalent O2- atoms. Both P–H bond lengths are 1.42 Å. Both P–O bond lengths are 1.53 Å. H1+ is bonded in a single-bond geometry to one P1+ atom. O2- is bonded in a distorted single-bondmore »« less

Similar Records