The influence of the number of tree searches on maximum likelihood inference in phylogenomics

Shen, Xing-Xing; Hittinger, Chris Todd

doi:10.6084/m9.figshare.17086259

Title: The influence of the number of tree searches on maximum likelihood inference in phylogenomics

Dataset
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Abstract

This repository contains 19,414 multiple sequence alignments from 15 phylogenomic studies, all gene trees, and 20,000 simulated genes and trees.

Authors:

Shen, Xing-Xing; Hittinger, Chris Todd

Zhejiang University
GLBRC - University of Wisconsin-Madison

Publication Date:: Tue Jun 25 04:00:00 UTC 2024

DOE Contract Number:: SC0018409

Research Org.:: Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Subject:: heuristic tree search; hil climbing; local optima; maximum likelihood; phylogenomics; species tree estimation

OSTI Identifier:: 3003590

DOI:: https://doi.org/10.6084/m9.figshare.17086259

Citation Formats


                    Shen, Xing-Xing, and Hittinger, Chris Todd. The influence of the number of tree searches on maximum likelihood inference in phylogenomics.  United States: N. p., 2024. 
        Web.  doi:10.6084/m9.figshare.17086259.

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                    Shen, Xing-Xing, & Hittinger, Chris Todd. The influence of the number of tree searches on maximum likelihood inference in phylogenomics.  United States.  doi:https://doi.org/10.6084/m9.figshare.17086259

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                    Shen, Xing-Xing, and Hittinger, Chris Todd. 2024.  
"The influence of the number of tree searches on maximum likelihood inference in phylogenomics".  United States.  doi:https://doi.org/10.6084/m9.figshare.17086259.  https://www.osti.gov/servlets/purl/3003590. Pub date:Tue Jun 25 04:00:00 UTC 2024

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@article{osti_3003590,

  title        = {The influence of the number of tree searches on maximum likelihood inference in phylogenomics},

  author       = {Shen, Xing-Xing and Hittinger, Chris Todd},

  abstractNote = {This repository contains 19,414 multiple sequence alignments from 15 phylogenomic studies, all gene trees, and 20,000 simulated genes and trees.},

  doi          = {10.6084/m9.figshare.17086259},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Jun 25 04:00:00 UTC 2024},

  month        = {Tue Jun 25 04:00:00 UTC 2024}

}

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DOI: https://doi.org/10.6084/m9.figshare.17086259

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