U.S. Department of EnergyOffice of Scientific and Technical Information
BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
Abstract
A high confidence barley reference transcript dataset consisting of 60,444 genes with 177,240 transcripts has been generated. Compared to current barley transcripts, BaRTv1.0 transcripts are generally longer, have less fragmentation and improved gene models that are well supported by splice junction reads. Precise transcript quantification using BaRTv1.0 allows routine analysis of gene expression and AS.
- Authors:
-
- Division of Plant Sciences, School of Life Sciences, University of Dundee at the James Hutton Institute, Dundee, United Kingdom
- GLBRC - University of Wisconsin
- Publication Date:
- DOE Contract Number:
- SC0018409
- Research Org.:
- Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- Subject:
- RNAi; S/G; barley; bioeconomy; biosynthetic pathway; ferulate 5-hydroxylase; lignin; straw
- OSTI Identifier:
- 3003555
- DOI:
- https://doi.org/10.5281/zenodo.3360434
Citation Formats
Halpin, Claire, and Ralph, John. BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq. United States: N. p., 2019.
Web. doi:10.5281/zenodo.3360434.
Halpin, Claire, & Ralph, John. BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq. United States. doi:https://doi.org/10.5281/zenodo.3360434
Halpin, Claire, and Ralph, John. 2019.
"BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq". United States. doi:https://doi.org/10.5281/zenodo.3360434. https://www.osti.gov/servlets/purl/3003555. Pub date:Mon Aug 05 00:00:00 EDT 2019
@article{osti_3003555,
title = {BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq},
author = {Halpin, Claire and Ralph, John},
abstractNote = {A high confidence barley reference transcript dataset consisting of 60,444 genes with 177,240 transcripts has been generated. Compared to current barley transcripts, BaRTv1.0 transcripts are generally longer, have less fragmentation and improved gene models that are well supported by splice junction reads. Precise transcript quantification using BaRTv1.0 allows routine analysis of gene expression and AS.},
doi = {10.5281/zenodo.3360434},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Mon Aug 05 00:00:00 EDT 2019},
month = {Mon Aug 05 00:00:00 EDT 2019}
}
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