Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs

Dyer, Lee; Chambers, Jeff; Pastorello, Gilberto; Weber, Anna

doi:10.15485/2561510

Title: Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs

Dataset
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Abstract

This package contains data, outputs, equations, and R scripts for analyses for manuscript entitled "Hot droughts in the Amazon: A window to a future hypertropical climate" by J. Chambers et al., in particular it contains statistical models and analyses for the INPA BIONTE tree mortality study. The Models folder contains details for all statistical models in PDF files. The Scripts folder contains the R scripts for Bayesian Hierarchical Models (two text files) and SEMs (one text file) are separate and reasonably annotated. All data associated with these scripts are in the data folder. The Data folder contains two of the three CSV files used for the analyses and are called by the R scripts. Two of them are part of published datasets (`BIONTE_mortality-rates.csv` from Lima et al. 2024, DOI:10.15486/ngt/1898910 and `SPEI.csv` from Pastorello et al. 2023 DOI:10.15486/ngt/1958257) and also provided in this package for convenience (please see the corresponding datasets for usage and citation terms). The third dataset (`BIONTE_gapfilled_wd.csv`) contains sensitive information and can be obtained by contacting the manuscript lead author. The Outputs folder contains the two output files that provide extra information about the analyses. The file `figuresFeb2025d.pdf` contains all the figures from the manuscript - captions aremore »« less

Authors:

;

; Weber, Anna

University of Nevada, Reno
University of California Berkeley
Lawrence Berkeley National Laboratory

Publication Date:: Tue Dec 31 23:00:00 EST 2024

DOE Contract Number:: AC02-05CH11231

Research Org.:: Next-Generation Ecosystem Experiments (NGEE) Tropics

Sponsoring Org.:: U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES; EARTH SCIENCE > ATMOSPHERE > WEATHER EVENTS > DROUGHTS; EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > PLANTS; EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS; EARTH SCIENCE > BIOSPHERE > VEGETATION; ESS-DIVE Location Metadata Reporting Format

OSTI Identifier:: 2561510

DOI:: https://doi.org/10.15485/2561510

Citation Formats


                    Dyer, Lee, Chambers, Jeff, Pastorello, Gilberto, and Weber, Anna. Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs.  United States: N. p., 2024. 
        Web.  doi:10.15485/2561510.

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                    Dyer, Lee, Chambers, Jeff, Pastorello, Gilberto, & Weber, Anna. Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs.  United States.  doi:https://doi.org/10.15485/2561510

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                    Dyer, Lee, Chambers, Jeff, Pastorello, Gilberto, and Weber, Anna. 2024.  
"Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs".  United States.  doi:https://doi.org/10.15485/2561510.  https://www.osti.gov/servlets/purl/2561510. Pub date:Tue Dec 31 23:00:00 EST 2024

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@article{osti_2561510,

  title        = {Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs},

  author       = {Dyer, Lee and Chambers, Jeff and Pastorello, Gilberto and Weber, Anna},

  abstractNote = {This package contains data, outputs, equations, and R scripts for analyses for manuscript entitled "Hot droughts in the Amazon: A window to a future hypertropical climate" by J. Chambers et al., in particular it contains statistical models and analyses for the INPA BIONTE tree mortality study. The Models folder contains details for all statistical models in PDF files. The Scripts folder contains the R scripts for Bayesian Hierarchical Models (two text files) and SEMs (one text file) are separate and reasonably annotated. All data associated with these scripts are in the data folder. The Data folder contains two of the three CSV files used for the analyses and are called by the R scripts. Two of them are part of published datasets (`BIONTE_mortality-rates.csv` from Lima et al. 2024, DOI:10.15486/ngt/1898910 and `SPEI.csv` from Pastorello et al. 2023 DOI:10.15486/ngt/1958257) and also provided in this package for convenience (please see the corresponding datasets for usage and citation terms). The third dataset (`BIONTE_gapfilled_wd.csv`) contains sensitive information and can be obtained by contacting the manuscript lead author. The Outputs folder contains the two output files that provide extra information about the analyses. The file `figuresFeb2025d.pdf` contains all the figures from the manuscript - captions are in the manuscript. The file `ChambersMS.pdf` contains primary results from Bayesian statistical models, regression analyses, and validation steps applied to the tree mortality data from the INPA experiments. The document includes visual summaries, model diagnostics, and leave-one-out (LOO) validation results. A breakdown of file contents can be found in the README file that is part of this package.},

  doi          = {10.15485/2561510},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Tue Dec 31 23:00:00 EST 2024},

  month        = {Tue Dec 31 23:00:00 EST 2024}

}

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DOI: https://doi.org/10.15485/2561510

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