The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers

Borton, Mikayla; Wrighton, Kelly

doi:10.5281/zenodo.8173286

Title: The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers

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Abstract

This repository contains data for version 1 of the Genome Resolved Open Watersheds database (GROWdb), along with data for the manuscript describing GROWdb.

Authors:

;

Colorado State Univ., Fort Collins, CO (United States); Colorado State Univ., Fort Collins, CO (United States)
Colorado State Univ., Fort Collins, CO (United States)

Publication Date:: Wed May 15 04:00:00 UTC 2024

DOE Contract Number:: SC0023084; SC0021350

Research Org.:: Colorado State Univ., Fort Collins, CO (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Subject:: 59 BASIC BIOLOGICAL SCIENCES; metagenome; metatranscriptome; microbial; microbiome; river

OSTI Identifier:: 2520472

DOI:: https://doi.org/10.5281/zenodo.8173286

Citation Formats


                    Borton, Mikayla, and Wrighton, Kelly. The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers.  United States: N. p., 2024. 
        Web.  doi:10.5281/zenodo.8173286.

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                    Borton, Mikayla, & Wrighton, Kelly. The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers.  United States.  doi:https://doi.org/10.5281/zenodo.8173286

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                    Borton, Mikayla, and Wrighton, Kelly. 2024.  
"The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers".  United States.  doi:https://doi.org/10.5281/zenodo.8173286.  https://www.osti.gov/servlets/purl/2520472. Pub date:Wed May 15 04:00:00 UTC 2024

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@article{osti_2520472,

  title        = {The Genome Resolved Open Watersheds database (GROWdb): A functional microbiome catalog crowdsourced from North American rivers},

  author       = {Borton, Mikayla and Wrighton, Kelly},

  abstractNote = {This repository contains data for version 1 of the Genome Resolved Open Watersheds database (GROWdb), along with data for the manuscript describing GROWdb.},

  doi          = {10.5281/zenodo.8173286},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Wed May 15 04:00:00 UTC 2024},

  month        = {Wed May 15 04:00:00 UTC 2024}

}

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DOI: https://doi.org/10.5281/zenodo.8173286

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Ultrahigh-resolution mass spectrometry data associated with the manuscript “A functional microbiome catalog crowdsourced from North American rivers"

Dataset Danczak, Robert E. ; Borton, Mikayla A. ; Wrighton, Kelly C. ; ...

This data package is associated with the publication “A functional microbiome catalog crowdsourced from North American rivers” submitted to Nature (Borton et al., 2024); (https://www.biorxiv.org/content/10.1101/2023.07.22.550117v1). Predicting elemental cycles and maintaining water quality under increasing anthropogenic influence requires understanding the spatial drivers of river microbiomes. However, the unifying microbial determinants governing river biogeochemistry are hindered by a lack of genome-resolved functional insights and sampling across multiple rivers. Here we employed a community science effort to accelerate the sampling of river microbiomes to create the Genome Resolved Open Watersheds database (GROWdb). GROWdb is a publicly available resource that paves the way formore »« less
A functional microbiome catalogue crowdsourced from North American rivers

Journal Article Borton, Mikayla A. ; McGivern, Bridget B. ; Willi, Kathryn R. ; ... - Nature (London)

Predicting elemental cycles and maintaining water quality under increasing anthropogenic influence requires knowledge of the spatial drivers of river microbiomes. However, understanding of the core microbial processes governing river biogeochemistry is hindered by a lack of genome-resolved functional insights and sampling across multiple rivers. Here we used a community science effort to accelerate the sampling, sequencing and genome-resolved analyses of river microbiomes to create the Genome Resolved Open Watersheds database (GROWdb). GROWdb profiles the identity, distribution, function and expression of microbial genomes across river surface waters covering 90% of United States watersheds. Specifically, GROWdb encompasses microbial lineages from 27 phyla,more »« less
A functional microbiome catalogue crowdsourced from North American rivers

Journal Article Borton, Mikayla A. ; McGivern, Bridget B. ; Willi, Kathryn R. ; ... - Nature (London)

Predicting elemental cycles and maintaining water quality under increasing anthropogenic influence requires knowledge of the spatial drivers of river microbiomes. However, understanding of the core microbial processes governing river biogeochemistry is hindered by a lack of genome-resolved functional insights and sampling across multiple rivers. Here we used a community science effort to accelerate the sampling, sequencing and genome-resolved analyses of river microbiomes to create the Genome Resolved Open Watersheds database (GROWdb). GROWdb profiles the identity, distribution, function and expression of microbial genomes across river surface waters covering 90% of United States watersheds. Specifically, GROWdb encompasses microbial lineages from 27 phyla,more »« less
A functional microbiome catalogue crowdsourced from North American rivers

Journal Article Borton, Mikayla A. ; McGivern, Bridget B. ; Willi, Kathryn R. ; ... - Nature (London)

Predicting elemental cycles and maintaining water quality under increasing anthropogenic influence requires knowledge of the spatial drivers of river microbiomes. However, understanding of the core microbial processes governing river biogeochemistry is hindered by a lack of genome-resolved functional insights and sampling across multiple rivers. Here we used a community science effort to accelerate the sampling, sequencing and genome-resolved analyses of river microbiomes to create the Genome Resolved Open Watersheds database (GROWdb). GROWdb profiles the identity, distribution, function and expression of microbial genomes across river surface waters covering 90% of United States watersheds. Specifically, GROWdb encompasses microbial lineages from 27 phyla,more »« less
A functional microbiome catalogue crowdsourced from North American rivers

Journal Article Borton, Mikayla A. ; McGivern, Bridget B. ; Willi, Kathryn R. ; ... - Nature (London)

Predicting elemental cycles and maintaining water quality under increasing anthropogenic influence requires knowledge of the spatial drivers of river microbiomes. However, understanding of the core microbial processes governing river biogeochemistry is hindered by a lack of genome-resolved functional insights and sampling across multiple rivers. Here we used a community science effort to accelerate the sampling, sequencing and genome-resolved analyses of river microbiomes to create the Genome Resolved Open Watersheds database (GROWdb). GROWdb profiles the identity, distribution, function and expression of microbial genomes across river surface waters covering 90% of United States watersheds. Specifically, GROWdb encompasses microbial lineages from 27 phyla,more »« less

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