HiC manuscript: bulk metagenomic HiC metaG Raw

Wu, Ruonan; McClure, Ryan; Nelson, William; Hofmockel, Kirsten

doi:10.25584/1970740

Title: HiC manuscript: bulk metagenomic HiC metaG Raw

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Abstract

The raw Hi-C metagenomic data were trimmed and aligned to the de-novo assemblies obtained from the paired shotgun metagenomes following the Hi-C kit manufacturer's recommendations (https://phasegenomics.github.io/2019/09/19/hic-alignment-and-qc.html). The contig-contig links or Hi-C links were quality-filtered for the identification of virus-host pairs.

Authors:

;

Pacific Northwest National Laboratory
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

Publication Date:: Wed Jan 25 23:00:00 EST 2023

DOE Contract Number:: AC05-76RL01830

Research Org.:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division

Subject:: 59 BASIC BIOLOGICAL SCIENCES

OSTI Identifier:: 1970740

DOI:: https://doi.org/10.25584/1970740

Citation Formats


                    Wu, Ruonan, McClure, Ryan, Nelson, William, and Hofmockel, Kirsten. HiC manuscript: bulk metagenomic HiC metaG Raw.  United States: N. p., 2023. 
        Web.  doi:10.25584/1970740.

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                    Wu, Ruonan, McClure, Ryan, Nelson, William, & Hofmockel, Kirsten. HiC manuscript: bulk metagenomic HiC metaG Raw.  United States.  doi:https://doi.org/10.25584/1970740

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                    Wu, Ruonan, McClure, Ryan, Nelson, William, and Hofmockel, Kirsten. 2023.  
"HiC manuscript: bulk metagenomic HiC metaG Raw".  United States.  doi:https://doi.org/10.25584/1970740.  https://www.osti.gov/servlets/purl/1970740. Pub date:Wed Jan 25 23:00:00 EST 2023

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@article{osti_1970740,

  title        = {HiC manuscript: bulk metagenomic HiC metaG Raw},

  author       = {Wu, Ruonan and McClure, Ryan and Nelson, William and Hofmockel, Kirsten},

  abstractNote = {The raw Hi-C metagenomic data were trimmed and aligned to the de-novo assemblies obtained from the paired shotgun metagenomes following the Hi-C kit manufacturer's recommendations (https://phasegenomics.github.io/2019/09/19/hic-alignment-and-qc.html). The contig-contig links or Hi-C links were quality-filtered for the identification of virus-host pairs.},

  doi          = {10.25584/1970740},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {Wed Jan 25 23:00:00 EST 2023},

  month        = {Wed Jan 25 23:00:00 EST 2023}

}

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DOI: https://doi.org/10.25584/1970740

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