U.S. Department of EnergyOffice of Scientific and Technical Information
Whole genome resequencing data from a collection of Clostridium Thermocellum strains
Abstract
Clostridium thermocellum is an anaerobic thermophilic bacterium that natively ferments cellulose to ethanol and organic acids. This data set is a collection of whole genome resequencing data for several hundred strains of Clostridium thermocellum. It includes strains that have been engineered to increase ethanol production, strains that have been engineered to understand microbial physiology, and strains that have been adapted for desired phenotypes including increased ethanol tolerance. Resequencing data consists of paired Illumina reads, 100-150 bp on each end, with a ~500 bp insert size. One data file containing raw Illumina data (interleaved) is available for each strain. We also provide data describing the mutations identified in each strain, and distinguish between inherited and newly observed mutations. In addition to resequencing data, we also provide metadata describing the lineage of each strain, and any targeted genetic modifications.
- Authors:
-
- Dartmouth College, Hanover, NH (United States)
- National Renewable Energy Lab. (NREL), Golden, CO (United States)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Publication Date:
- DOE Contract Number:
- AC05-00OR22725
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- Subject:
- resequencing bio energy fermentation
- OSTI Identifier:
- 1923916
- DOI:
- https://doi.org/10.25983/1923916
Citation Formats
Daniel, Olson G, Nag, Ambarish, Clark, Struan, and Martin, Stanton L. Whole genome resequencing data from a collection of Clostridium Thermocellum strains. United States: N. p., 2023.
Web. doi:10.25983/1923916.
Daniel, Olson G, Nag, Ambarish, Clark, Struan, & Martin, Stanton L. Whole genome resequencing data from a collection of Clostridium Thermocellum strains. United States. doi:https://doi.org/10.25983/1923916
Daniel, Olson G, Nag, Ambarish, Clark, Struan, and Martin, Stanton L. 2023.
"Whole genome resequencing data from a collection of Clostridium Thermocellum strains". United States. doi:https://doi.org/10.25983/1923916. https://www.osti.gov/servlets/purl/1923916. Pub date:Thu Feb 09 23:00:00 EST 2023
@article{osti_1923916,
title = {Whole genome resequencing data from a collection of Clostridium Thermocellum strains},
author = {Daniel, Olson G and Nag, Ambarish and Clark, Struan and Martin, Stanton L},
abstractNote = {Clostridium thermocellum is an anaerobic thermophilic bacterium that natively ferments cellulose to ethanol and organic acids. This data set is a collection of whole genome resequencing data for several hundred strains of Clostridium thermocellum. It includes strains that have been engineered to increase ethanol production, strains that have been engineered to understand microbial physiology, and strains that have been adapted for desired phenotypes including increased ethanol tolerance. Resequencing data consists of paired Illumina reads, 100-150 bp on each end, with a ~500 bp insert size. One data file containing raw Illumina data (interleaved) is available for each strain. We also provide data describing the mutations identified in each strain, and distinguish between inherited and newly observed mutations. In addition to resequencing data, we also provide metadata describing the lineage of each strain, and any targeted genetic modifications.},
doi = {10.25983/1923916},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Thu Feb 09 23:00:00 EST 2023},
month = {Thu Feb 09 23:00:00 EST 2023}
}