Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns"

Garayburu-Caruso, Vanessa A.; Goldman, Amy E.; Graham, Emily B.; Roley, Sarah; Renteria, Lupita; Stegen, James C.; Torgeson, Joshua M.; Kaufman, Matthew H.

doi:10.15485/1828377

Title: Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns"

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Abstract

This data package is associated with the publication "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns" submitted to Frontiers in Water (Garayburu-Caruso et al., 2022). This work presents a novel application of planar optode technology to sediment columns that allows the study of well-constrained flow fields without the need to assume completely homogeneous flow. We introduce a flow-through column with the interior coated in an oxygen sensing film and a series of sampling ports as a unique tool capable of capturing changes in dissolved oxygen (DO) at high frequency (10 s) and spatial (< 1 mm) resolution across the length of a column. In addition, we provide custom scripts that allows image processing steps to be automated and consistently reproduced over a variety of experimental conditions. This dataset is comprised of four folders (1) 01_Riverbed_Sediment_Experiment, (2) 02_Sand_Experiment, (3) 01_Riverbed_Sediment_Raw_Images, and (4) 02_Sand_Experiment_Raw_Images. 01_Riverbed_Sediment_Experiment contains (1) a subfolder with csv files that contain statistical parameters from the linear regressions applied to each optode image, (2) a subfolder with csv files from DO data measured by in-line sensors, (3) a subfolder with csv files containing column and injection specific input parameters for the image processing script, and (4) a subfoldermore »« less

Authors:

;

Pacific Northwest National Laboratory
Washington State University

Publication Date:: 2021-01-01

DOE Contract Number:: DOE Award #54737

Research Org.:: Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States)

Sponsoring Org.:: U.S. DOE > Office of Science > Biological and Environmental Research (BER)

Subject:: 54 ENVIRONMENTAL SCIENCES

Keywords:: River corridor; Sediments; Subsurface; Optode; Dissolved Oxygen; Optode raw images; Dissolved oxygen

Geolocation:: 46.3728,-119.272|46.3728,-119.272|46.3728,-119.272|46.3728,-119.272|46.3728,-119.272

OSTI Identifier:: 1828377

DOI:: https://doi.org/10.15485/1828377

Project Location:

Citation Formats


                    Garayburu-Caruso, Vanessa A., Goldman, Amy E., Graham, Emily B., Roley, Sarah, Renteria, Lupita, Stegen, James C., Torgeson, Joshua M., and Kaufman, Matthew H. Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns".  United States: N. p., 2021. 
        Web.  doi:10.15485/1828377.

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                    Garayburu-Caruso, Vanessa A., Goldman, Amy E., Graham, Emily B., Roley, Sarah, Renteria, Lupita, Stegen, James C., Torgeson, Joshua M., & Kaufman, Matthew H. Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns".  United States.  doi:https://doi.org/10.15485/1828377

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                    Garayburu-Caruso, Vanessa A., Goldman, Amy E., Graham, Emily B., Roley, Sarah, Renteria, Lupita, Stegen, James C., Torgeson, Joshua M., and Kaufman, Matthew H. 2021.  
"Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns"".  United States.  doi:https://doi.org/10.15485/1828377.  https://www.osti.gov/servlets/purl/1828377. Pub date:Fri Jan 01 00:00:00 EST 2021

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@article{osti_1828377,

  title        = {Optode Images, and Dissolved Oxygen Data from Sand and Sediment Flow-through Column Experiments associated with: "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns"},

  author       = {Garayburu-Caruso, Vanessa A. and Goldman, Amy E. and Graham, Emily B. and Roley, Sarah and Renteria, Lupita and Stegen, James C. and Torgeson, Joshua M. and Kaufman, Matthew H.},

  abstractNote = {This data package is associated with the publication "2-D Imaging of Dissolved Oxygen Concentration in Flow-Through Sediment Columns" submitted to Frontiers in Water (Garayburu-Caruso et al., 2022). This work presents a novel application of planar optode technology to sediment columns that allows the study of well-constrained flow fields without the need to assume completely homogeneous flow. We introduce a flow-through column with the interior coated in an oxygen sensing film and a series of sampling ports as a unique tool capable of capturing changes in dissolved oxygen (DO) at high frequency (10 s) and spatial (< 1 mm) resolution across the length of a column. In addition, we provide custom scripts that allows image processing steps to be automated and consistently reproduced over a variety of experimental conditions. This dataset is comprised of four folders (1) 01_Riverbed_Sediment_Experiment, (2) 02_Sand_Experiment, (3) 01_Riverbed_Sediment_Raw_Images, and (4) 02_Sand_Experiment_Raw_Images. 01_Riverbed_Sediment_Experiment contains (1) a subfolder with csv files that contain statistical parameters from the linear regressions applied to each optode image, (2) a subfolder with csv files from DO data measured by in-line sensors, (3) a subfolder with csv files containing column and injection specific input parameters for the image processing script, and (4) a subfolder with scripts used to process the images and create associated figures. 02_Sand_Experiment contains (1) a subfolder with csv files containing column and injection-specific input parameters for the image processing script, and (2) a subfolder with scripts used to process the images and create associated figures. 01_Riverbed_Sediment_Raw_Images (spited in 3 parts due to size) contains a subfolder with raw red, and green images from the optode system during the MilliQ Injection, Vanillin Injection or Vanillin + Sampling Injection respectively. 02_Sand_Experiment_Raw_Images contains a subfolder with raw red, and green images from the optode system. Outside of the main folders there is a csv containing file-level metadata and a csv data dictionary defining column headers for all csv files contained in the data package.},

  doi          = {10.15485/1828377},

  journal      = {},

  number       = ,

  volume       = ,

  place        = {United States},

  year         = {2021},

  month        = {1}

}

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DOI: https://doi.org/10.15485/1828377

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