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Title: Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama

Abstract

This dataset has ELM-FATES simulation outputs and scripts that accompany and reproduce the manuscript, Chitra-Tarak et al. (2021) Hydraulically-vulnerable trees survive on deep-water access during droughts in a tropical forest. New Phytologist. https: //doi.org/10.1111/nph.17464”. This dataset is organized into four parts: (1) source code for the model, Energy Exascale Earth System Land Model-Functionally Assembled Advanced Terrestrial simulator (ELM-FATES) (2) R scripts associated with ELM-FATES simulations: to prepare files for parameter ensemble simulation runs, calibrate the model with observed hydrological fluxes observed at BCI, re-run the model with tuned parameters and obtain long-term soil matric potentials by depth (3) ELM-FATES hydrological simulation outputs at PA-BCI, Panama (1990-2018, daily), and (4) R scripts for inverse rooting depth modeling and post-processing: prepare datasets and inversely model tree rooting depths at BCI, test hypotheses about the relationship of rooting depths with plant hydraulic traits and drought-induced mortality, and reproduce the manuscript itself. n.b. 1. Data needed to run R scripts in (2) and (4) and thus to reproduce the manuscript are sourced from various public datasets. Refer to the data availability section of the accompanying manuscript. 2. This dataset version (prepared on May 12, 2021) matches the revised and published version of the accompanyingmore » manuscript (published May 16, 2021) replacing a previous version. In the publication, this dataset is cited as follows: Chitra-Tarak R, Xu C, Aguilar S, Anderson-Teixeira K, Chambers J, Detto M, Faybishenko B, Fisher R, Knox R, Koven C et al. 2020. Soil water potentials (1990–2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama. 2.0. NGEE Tropics Data Collection. doi: 10.15486/ngt/1696806« less

Authors:
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  1. Los Alamos National Laboratory; Lawrence Berkeley National Lab
  2. Los Alamos National Laboratory
  3. Smithsonian Tropical Research Institute
  4. Lawrence Berkeley National Laboratory
  5. Princeton
  6. National Center for Atmospheric Research
  7. Pacific Northwest National Laboratory
  8. Smithsonian Tropical Research Institution
  9. Oak Ridge National Laboratory
  10. Louisiana State University
  11. Smithsonian Institution
Publication Date:
Other Number(s):
NGT0160
Research Org.:
Next-Generation Ecosystem Experiments Tropics; Los Alamos National Lab
Sponsoring Org.:
National Science Foundation
Subject:
54 ENVIRONMENTAL SCIENCES
OSTI Identifier:
1696806
DOI:
https://doi.org/10.15486/ngt/1696806

Citation Formats

Chitra-Tarak, Rutuja, Xu, Chonggang, Aguilar, Salomón, Anderson-Teixeira, Kristina, Chambers, Jeff, Detto, Matteo, Faybishenko, Boris, Fisher, Rosie, Knox, Ryan, Koven, Charlie, Kueppers, Lara, Norbert, Kunert, Kupers, Stefan, McDowell, Nate, Newman, Brent, Paton, Steve, Pérez, Rolanod, Ruiz, Laurent, Sack, Lawren, Warren, Jeffrey, Wolfe, Brett, Wright, Cynthia, Wright, Joseph, Zailaa, Joseph, and McMahon, Sean. Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama. United States: N. p., 2020. Web. doi:10.15486/ngt/1696806.
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Chitra-Tarak, Rutuja, Xu, Chonggang, Aguilar, Salomón, Anderson-Teixeira, Kristina, Chambers, Jeff, Detto, Matteo, Faybishenko, Boris, Fisher, Rosie, Knox, Ryan, Koven, Charlie, Kueppers, Lara, Norbert, Kunert, Kupers, Stefan, McDowell, Nate, Newman, Brent, Paton, Steve, Pérez, Rolanod, Ruiz, Laurent, Sack, Lawren, Warren, Jeffrey, Wolfe, Brett, Wright, Cynthia, Wright, Joseph, Zailaa, Joseph, & McMahon, Sean. Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama. United States. doi:https://doi.org/10.15486/ngt/1696806
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Chitra-Tarak, Rutuja, Xu, Chonggang, Aguilar, Salomón, Anderson-Teixeira, Kristina, Chambers, Jeff, Detto, Matteo, Faybishenko, Boris, Fisher, Rosie, Knox, Ryan, Koven, Charlie, Kueppers, Lara, Norbert, Kunert, Kupers, Stefan, McDowell, Nate, Newman, Brent, Paton, Steve, Pérez, Rolanod, Ruiz, Laurent, Sack, Lawren, Warren, Jeffrey, Wolfe, Brett, Wright, Cynthia, Wright, Joseph, Zailaa, Joseph, and McMahon, Sean. 2020. "Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama". United States. doi:https://doi.org/10.15486/ngt/1696806. https://www.osti.gov/servlets/purl/1696806. Pub date:Thu Dec 31 23:00:00 EST 2020
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@article{osti_1696806,
title = {Soil Water Potentials (1990-2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama},
author = {Chitra-Tarak, Rutuja and Xu, Chonggang and Aguilar, Salomón and Anderson-Teixeira, Kristina and Chambers, Jeff and Detto, Matteo and Faybishenko, Boris and Fisher, Rosie and Knox, Ryan and Koven, Charlie and Kueppers, Lara and Norbert, Kunert and Kupers, Stefan and McDowell, Nate and Newman, Brent and Paton, Steve and Pérez, Rolanod and Ruiz, Laurent and Sack, Lawren and Warren, Jeffrey and Wolfe, Brett and Wright, Cynthia and Wright, Joseph and Zailaa, Joseph and McMahon, Sean},
abstractNote = {This dataset has ELM-FATES simulation outputs and scripts that accompany and reproduce the manuscript, Chitra-Tarak et al. (2021) Hydraulically-vulnerable trees survive on deep-water access during droughts in a tropical forest. New Phytologist. https: //doi.org/10.1111/nph.17464”. This dataset is organized into four parts: (1) source code for the model, Energy Exascale Earth System Land Model-Functionally Assembled Advanced Terrestrial simulator (ELM-FATES) (2) R scripts associated with ELM-FATES simulations: to prepare files for parameter ensemble simulation runs, calibrate the model with observed hydrological fluxes observed at BCI, re-run the model with tuned parameters and obtain long-term soil matric potentials by depth (3) ELM-FATES hydrological simulation outputs at PA-BCI, Panama (1990-2018, daily), and (4) R scripts for inverse rooting depth modeling and post-processing: prepare datasets and inversely model tree rooting depths at BCI, test hypotheses about the relationship of rooting depths with plant hydraulic traits and drought-induced mortality, and reproduce the manuscript itself. n.b. 1. Data needed to run R scripts in (2) and (4) and thus to reproduce the manuscript are sourced from various public datasets. Refer to the data availability section of the accompanying manuscript. 2. This dataset version (prepared on May 12, 2021) matches the revised and published version of the accompanying manuscript (published May 16, 2021) replacing a previous version. In the publication, this dataset is cited as follows: Chitra-Tarak R, Xu C, Aguilar S, Anderson-Teixeira K, Chambers J, Detto M, Faybishenko B, Fisher R, Knox R, Koven C et al. 2020. Soil water potentials (1990–2018) from a calibrated ELM-FATES, and rooting depth analyses scripts, PA-BCI, Panama. 2.0. NGEE Tropics Data Collection. doi: 10.15486/ngt/1696806},
doi = {10.15486/ngt/1696806},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Thu Dec 31 23:00:00 EST 2020},
month = {Thu Dec 31 23:00:00 EST 2020}
}
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DOI: https://doi.org/10.15486/ngt/1696806
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