U.S. Department of EnergyOffice of Scientific and Technical Information
ESS-DIVE reporting format for leaf-level gas exchange data and metadata
Abstract
Here we present documentation of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata. This reporting format provides guidance to data contributors on how to store data to maximize their discoverability, facilitate their efficient reuse, and add value to individual datasets. For data users, the reporting format will better allow data repositories to optimize data search and extraction, and more readily integrate similar data into harmonized synthesis products. The reporting format specifies data table variable naming and unit conventions, as well as metadata characterizing experimental conditions and protocols. For common data types that were the focus of this initial version of the reporting format, i.e., survey measurements, dark respiration, carbon dioxide and light response curves, and parameters derived from those measurements, we took a further step of defining required additional data that would maximize the potential reuse of those data types. To aid data contributors and the development of data ingest tools by data repositories we provided a translation table comparing the outputs of common gas exchange instruments. The reporting format presented here is intended to form a foundation for future development that will incorporate additional data types and variables as gas exchange systems and measurement approaches advancemore »
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- Brookhaven National Lab
- Lawrence Berkeley National Laboratory
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- Lawrence Berkeley National Laboratory,
- USDA ARS GCPRU
- West Virginia University
- University of Goettingen
- Brookhaven National Laboratory
- Auburn University
- University of Balearic Islands
- ADC Bioscientific Ltd
- University of California Davis
- USDA-ARS
- University of Birmingham
- University of Essex
- James Cook University
- Lawrence Berkeley National Laboratory
- ARC Centre of Excellence for Climate Extremes
- Boston University
- University of São Paulo
- University of Gothenburg
- Western Sydney University
- The Australian National University
- NOAA/Geophysical Fluid Dynamics Laboratory
- Smithsonian Tropical Research Institute
- LI-COR Biosciences
- Virginia Commonwealth University
- University of Bergen
- University of New Mexico
- Macalester College
- Florida International Univeristy
- Max Planck Institute for Biogeochemistry
- University of California Berkeley
- University of Cambridge
- Coconut Research Institute of Sri Lanka
- University of Illinois at Urbana-Champaign
- University of Arizona
- Lancaster University
- Pacific Northwest National Laboratory (PNNL)
- Estonian University of Life Sciences
- University of Sheffield
- Forschungszentrum Juelich GmbH
- US Geological Survey
- Seoul National University
- Columbia University
- Michigan State University
- Texas Tech University
- Washington State University
- Louisiana State University
- National Institute for Amazon Research
- Oak Ridge National Laboratory
- University of Western Ontario
- The University of Hong Kong
- Los Alamos National Laboratory
- The Univeristy of Hong Kong
- Publication Date:
- Research Org.:
- Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States); Environmental Systems Science Data Infrastructure for a Virtual Ecosystem
- Sponsoring Org.:
- U.S. DOE > Office of Science > Biological and Environmental Research (BER)
- Subject:
- 54 ENVIRONMENTAL SCIENCES
- Keywords:
- EARTH SCIENCE > BIOSPHERE > VEGETATION; EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS; EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS
- OSTI Identifier:
- 1659484
- DOI:
- https://doi.org/10.15485/1659484
Citation Formats
Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, and Yan, Zhengbing. ESS-DIVE reporting format for leaf-level gas exchange data and metadata. United States: N. p., 2020.
Web. doi:10.15485/1659484.
Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, & Yan, Zhengbing. ESS-DIVE reporting format for leaf-level gas exchange data and metadata. United States. doi:https://doi.org/10.15485/1659484
Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, and Yan, Zhengbing. 2020.
"ESS-DIVE reporting format for leaf-level gas exchange data and metadata". United States. doi:https://doi.org/10.15485/1659484. https://www.osti.gov/servlets/purl/1659484. Pub date:Tue Dec 08 00:00:00 EST 2020
@article{osti_1659484,
title = {ESS-DIVE reporting format for leaf-level gas exchange data and metadata},
author = {Ely, Kim and Rogers, Alistair and Crystal-Ornelas, Robert and Agarwal, Deborah and Elizabeth, Ainsworth and Albert, Loren and Ali, Ashehad and Anderson, Jeremiah and Aspinwall, Michael and Bellasio, Chandra and Bernacchi, Carl and Bonnage, Steve and Buckley, Thomas and Bunce, James and Burnett, Angela and Busch, Florian and Cavanagh, Amanda and Cernusak, Lucas and Damerow, Joan and Davidson, Kenneth and De Kauwe, Martin and Dietze, Michael and Domingues, Tomas and Dusenge, Mirindi and Ellsworth, David and Evans, John and Gauthier, Paul and Gimenez, Bruno and Gordon, Elizabeth and Gough, Christopher and Halbritter, Aud and Hanson, David and Heskel, Mary and Hogan, Aaron and Hupp, Jason and Jardine, Kolby and Kattge, Jens and Keenan, Trevor and Kromdijk, Johannes and Kumarathunge, Dushan and Lamour, Julien and Leakey, Andrew and LeBauer, David and Li, Qianyu and Lundgren, Marjorie and McDowell, Nate and Meacham-Hensold, Katherine and Medlyn, Belinda and Moore, David and Negrón-Juárez, Robinson and Niinemets, Ülo and Osborne, Colin and Pivovaroff, Alexandria and Porter, Hendrik and Reed, Sasha and Ryu, Youngryel and Sanz-Saez, Alvaro and Schmiege, Stephanie and Serbin, Shawn and Sharkey, Thomas and Slot, Martijn and Smith, Nicholas and Sonewane, Balasaheb and South, Paul and Souza, Daisy and Stinziano, Joseph and Stuart-Haëntjens, Ellen and Taylor, Samuel and Tejera, Mauricio and Uddling, Johan and Vandik, Vigdis and Varadharajan, Charuleka and Walker, Anthony and Walker, Berkley and Warren, Jeffrey and Way, Danielle and Wolfe, Brett and Wu, Jin and Wullschleger, Stan and Xu, Chonggang and Yang, Dedi and Yan, Zhengbing},
abstractNote = {Here we present documentation of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata. This reporting format provides guidance to data contributors on how to store data to maximize their discoverability, facilitate their efficient reuse, and add value to individual datasets. For data users, the reporting format will better allow data repositories to optimize data search and extraction, and more readily integrate similar data into harmonized synthesis products. The reporting format specifies data table variable naming and unit conventions, as well as metadata characterizing experimental conditions and protocols. For common data types that were the focus of this initial version of the reporting format, i.e., survey measurements, dark respiration, carbon dioxide and light response curves, and parameters derived from those measurements, we took a further step of defining required additional data that would maximize the potential reuse of those data types. To aid data contributors and the development of data ingest tools by data repositories we provided a translation table comparing the outputs of common gas exchange instruments. The reporting format presented here is intended to form a foundation for future development that will incorporate additional data types and variables as gas exchange systems and measurement approaches advance in the future. The reporting format documentation is maintained and updated on the ESS-DIVE Community Space GitHub. This data package is the first published version of this reporting format, and comprises a zip file of the complete content of https://github.com/ess-dive-community/essdive-leaf-gas-exchange v1.0. The zip contains the reporting format description, guidelines, variable tables and instructions in GitHub markdown language (*.md) and 2 metadata templates as spreadsheets with drop down options (*.xlsx files, also function in GoogleSheets).},
doi = {10.15485/1659484},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {12}
}
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