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Title: ESS-DIVE reporting format for leaf-level gas exchange data and metadata

Abstract

Here we present documentation of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata. This reporting format provides guidance to data contributors on how to store data to maximize their discoverability, facilitate their efficient reuse, and add value to individual datasets. For data users, the reporting format will better allow data repositories to optimize data search and extraction, and more readily integrate similar data into harmonized synthesis products. The reporting format specifies data table variable naming and unit conventions, as well as metadata characterizing experimental conditions and protocols. For common data types that were the focus of this initial version of the reporting format, i.e., survey measurements, dark respiration, carbon dioxide and light response curves, and parameters derived from those measurements, we took a further step of defining required additional data that would maximize the potential reuse of those data types. To aid data contributors and the development of data ingest tools by data repositories we provided a translation table comparing the outputs of common gas exchange instruments. The reporting format presented here is intended to form a foundation for future development that will incorporate additional data types and variables as gas exchange systems and measurement approaches advancemore » in the future. The reporting format documentation is maintained and updated on the ESS-DIVE Community Space GitHub. This data package is the first published version of this reporting format, and comprises a zip file of the complete content of https://github.com/ess-dive-community/essdive-leaf-gas-exchange v1.0. The zip contains the reporting format description, guidelines, variable tables and instructions in GitHub markdown language (*.md) and 2 metadata templates as spreadsheets with drop down options (*.xlsx files, also function in GoogleSheets).« less

Authors:
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  1. Brookhaven National Lab
  2. Lawrence Berkeley National Laboratory
Contributors:
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  1. Lawrence Berkeley National Laboratory,
  2. USDA ARS GCPRU
  3. West Virginia University
  4. University of Goettingen
  5. Brookhaven National Laboratory
  6. Auburn University
  7. University of Balearic Islands
  8. ADC Bioscientific Ltd
  9. University of California Davis
  10. USDA-ARS
  11. University of Birmingham
  12. University of Essex
  13. James Cook University
  14. Lawrence Berkeley National Laboratory
  15. ARC Centre of Excellence for Climate Extremes
  16. Boston University
  17. University of São Paulo
  18. University of Gothenburg
  19. Western Sydney University
  20. The Australian National University
  21. NOAA/Geophysical Fluid Dynamics Laboratory
  22. Smithsonian Tropical Research Institute
  23. LI-COR Biosciences
  24. Virginia Commonwealth University
  25. University of Bergen
  26. University of New Mexico
  27. Macalester College
  28. Florida International Univeristy
  29. Max Planck Institute for Biogeochemistry
  30. University of California Berkeley
  31. University of Cambridge
  32. Coconut Research Institute of Sri Lanka
  33. University of Illinois at Urbana-Champaign
  34. University of Arizona
  35. Lancaster University
  36. Pacific Northwest National Laboratory (PNNL)
  37. Estonian University of Life Sciences
  38. University of Sheffield
  39. Forschungszentrum Juelich GmbH
  40. US Geological Survey
  41. Seoul National University
  42. Columbia University
  43. Michigan State University
  44. Texas Tech University
  45. Washington State University
  46. Louisiana State University
  47. National Institute for Amazon Research
  48. Oak Ridge National Laboratory
  49. University of Western Ontario
  50. The University of Hong Kong
  51. Los Alamos National Laboratory
  52. The Univeristy of Hong Kong
Publication Date:
Product Type:
Dataset
Research Org.:
Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) (United States); Environmental Systems Science Data Infrastructure for a Virtual Ecosystem
Sponsoring Org.:
U.S. DOE > Office of Science > Biological and Environmental Research (BER)
Subject:
54 ENVIRONMENTAL SCIENCES
Keywords:
EARTH SCIENCE > BIOSPHERE > VEGETATION; EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS; EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS
OSTI Identifier:
1659484
DOI:
https://doi.org/10.15485/1659484

Citation Formats

Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, and Yan, Zhengbing. ESS-DIVE reporting format for leaf-level gas exchange data and metadata. United States: N. p., 2020. Web. doi:10.15485/1659484.
Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, & Yan, Zhengbing. ESS-DIVE reporting format for leaf-level gas exchange data and metadata. United States. doi:https://doi.org/10.15485/1659484
Ely, Kim, Rogers, Alistair, Crystal-Ornelas, Robert, Agarwal, Deborah, Elizabeth, Ainsworth, Albert, Loren, Ali, Ashehad, Anderson, Jeremiah, Aspinwall, Michael, Bellasio, Chandra, Bernacchi, Carl, Bonnage, Steve, Buckley, Thomas, Bunce, James, Burnett, Angela, Busch, Florian, Cavanagh, Amanda, Cernusak, Lucas, Damerow, Joan, Davidson, Kenneth, De Kauwe, Martin, Dietze, Michael, Domingues, Tomas, Dusenge, Mirindi, Ellsworth, David, Evans, John, Gauthier, Paul, Gimenez, Bruno, Gordon, Elizabeth, Gough, Christopher, Halbritter, Aud, Hanson, David, Heskel, Mary, Hogan, Aaron, Hupp, Jason, Jardine, Kolby, Kattge, Jens, Keenan, Trevor, Kromdijk, Johannes, Kumarathunge, Dushan, Lamour, Julien, Leakey, Andrew, LeBauer, David, Li, Qianyu, Lundgren, Marjorie, McDowell, Nate, Meacham-Hensold, Katherine, Medlyn, Belinda, Moore, David, Negrón-Juárez, Robinson, Niinemets, Ülo, Osborne, Colin, Pivovaroff, Alexandria, Porter, Hendrik, Reed, Sasha, Ryu, Youngryel, Sanz-Saez, Alvaro, Schmiege, Stephanie, Serbin, Shawn, Sharkey, Thomas, Slot, Martijn, Smith, Nicholas, Sonewane, Balasaheb, South, Paul, Souza, Daisy, Stinziano, Joseph, Stuart-Haëntjens, Ellen, Taylor, Samuel, Tejera, Mauricio, Uddling, Johan, Vandik, Vigdis, Varadharajan, Charuleka, Walker, Anthony, Walker, Berkley, Warren, Jeffrey, Way, Danielle, Wolfe, Brett, Wu, Jin, Wullschleger, Stan, Xu, Chonggang, Yang, Dedi, and Yan, Zhengbing. 2020. "ESS-DIVE reporting format for leaf-level gas exchange data and metadata". United States. doi:https://doi.org/10.15485/1659484. https://www.osti.gov/servlets/purl/1659484. Pub date:Tue Dec 08 00:00:00 EST 2020
@article{osti_1659484,
title = {ESS-DIVE reporting format for leaf-level gas exchange data and metadata},
author = {Ely, Kim and Rogers, Alistair and Crystal-Ornelas, Robert and Agarwal, Deborah and Elizabeth, Ainsworth and Albert, Loren and Ali, Ashehad and Anderson, Jeremiah and Aspinwall, Michael and Bellasio, Chandra and Bernacchi, Carl and Bonnage, Steve and Buckley, Thomas and Bunce, James and Burnett, Angela and Busch, Florian and Cavanagh, Amanda and Cernusak, Lucas and Damerow, Joan and Davidson, Kenneth and De Kauwe, Martin and Dietze, Michael and Domingues, Tomas and Dusenge, Mirindi and Ellsworth, David and Evans, John and Gauthier, Paul and Gimenez, Bruno and Gordon, Elizabeth and Gough, Christopher and Halbritter, Aud and Hanson, David and Heskel, Mary and Hogan, Aaron and Hupp, Jason and Jardine, Kolby and Kattge, Jens and Keenan, Trevor and Kromdijk, Johannes and Kumarathunge, Dushan and Lamour, Julien and Leakey, Andrew and LeBauer, David and Li, Qianyu and Lundgren, Marjorie and McDowell, Nate and Meacham-Hensold, Katherine and Medlyn, Belinda and Moore, David and Negrón-Juárez, Robinson and Niinemets, Ülo and Osborne, Colin and Pivovaroff, Alexandria and Porter, Hendrik and Reed, Sasha and Ryu, Youngryel and Sanz-Saez, Alvaro and Schmiege, Stephanie and Serbin, Shawn and Sharkey, Thomas and Slot, Martijn and Smith, Nicholas and Sonewane, Balasaheb and South, Paul and Souza, Daisy and Stinziano, Joseph and Stuart-Haëntjens, Ellen and Taylor, Samuel and Tejera, Mauricio and Uddling, Johan and Vandik, Vigdis and Varadharajan, Charuleka and Walker, Anthony and Walker, Berkley and Warren, Jeffrey and Way, Danielle and Wolfe, Brett and Wu, Jin and Wullschleger, Stan and Xu, Chonggang and Yang, Dedi and Yan, Zhengbing},
abstractNote = {Here we present documentation of the ESS-DIVE reporting format for leaf-level gas exchange data and metadata. This reporting format provides guidance to data contributors on how to store data to maximize their discoverability, facilitate their efficient reuse, and add value to individual datasets. For data users, the reporting format will better allow data repositories to optimize data search and extraction, and more readily integrate similar data into harmonized synthesis products. The reporting format specifies data table variable naming and unit conventions, as well as metadata characterizing experimental conditions and protocols. For common data types that were the focus of this initial version of the reporting format, i.e., survey measurements, dark respiration, carbon dioxide and light response curves, and parameters derived from those measurements, we took a further step of defining required additional data that would maximize the potential reuse of those data types. To aid data contributors and the development of data ingest tools by data repositories we provided a translation table comparing the outputs of common gas exchange instruments. The reporting format presented here is intended to form a foundation for future development that will incorporate additional data types and variables as gas exchange systems and measurement approaches advance in the future. The reporting format documentation is maintained and updated on the ESS-DIVE Community Space GitHub. This data package is the first published version of this reporting format, and comprises a zip file of the complete content of https://github.com/ess-dive-community/essdive-leaf-gas-exchange v1.0. The zip contains the reporting format description, guidelines, variable tables and instructions in GitHub markdown language (*.md) and 2 metadata templates as spreadsheets with drop down options (*.xlsx files, also function in GoogleSheets).},
doi = {10.15485/1659484},
journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {12}
}