U.S. Department of EnergyOffice of Scientific and Technical Information
Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions
Abstract
This Narrative is part of a collection used in a single publication. The paper took a metagnomic and metatranscriptomic approach to examine a bioreactor's response to the presence of sulfate, which reduces the production of methane, a valuable product, while producing hydrogen sulfide, a corrosive contaminant. This Narrative collection has been created to highlight the types of analyses done for this publication. They are as follows (in order): SJ1 Metagenomes: a metagenomic analysis of sample SJ1, the initial bioreactor. SJ1 Metatranscriptomes: QC-filtered raw RNA reads were aligned to individual MAGs and assembled into transcripts. Metagenome-discovered food webs in a long-term methanogenic bioreactor and rapid switch to sulfate reducing conditions (this Narrative): the public Narrative referenced in the paper, which contains several key MAGs.
- Publication Date:
- DOE Contract Number:
- AC02-05CH11231
- Research Org.:
- Cornell Univ., Ithaca, NY (United States); Department of Energy Systems Biology Knowledgebase; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; metagenomics, metatranscriptomics, bioinformatics
- OSTI Identifier:
- 1637903
- DOI:
- https://doi.org/10.25982/51077.6/1637903
Citation Formats
St. James, Andrew. Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions. United States: N. p., 2020.
Web. doi:10.25982/51077.6/1637903.
St. James, Andrew. Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions. United States. doi:https://doi.org/10.25982/51077.6/1637903
St. James, Andrew. 2020.
"Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions". United States. doi:https://doi.org/10.25982/51077.6/1637903. https://www.osti.gov/servlets/purl/1637903. Pub date:Thu Jul 09 04:00:00 UTC 2020
@article{osti_1637903,
title = {Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions},
author = {St. James, Andrew},
abstractNote = {This Narrative is part of a collection used in a single publication. The paper took a metagnomic and metatranscriptomic approach to examine a bioreactor's response to the presence of sulfate, which reduces the production of methane, a valuable product, while producing hydrogen sulfide, a corrosive contaminant. This Narrative collection has been created to highlight the types of analyses done for this publication. They are as follows (in order): SJ1 Metagenomes: a metagenomic analysis of sample SJ1, the initial bioreactor. SJ1 Metatranscriptomes: QC-filtered raw RNA reads were aligned to individual MAGs and assembled into transcripts. Metagenome-discovered food webs in a long-term methanogenic bioreactor and rapid switch to sulfate reducing conditions (this Narrative): the public Narrative referenced in the paper, which contains several key MAGs.},
doi = {10.25982/51077.6/1637903},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Thu Jul 09 04:00:00 UTC 2020},
month = {Thu Jul 09 04:00:00 UTC 2020}
}