Multi-genome Phage Annotation Toolkit and Evaluator
- Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Summary: To address the need for improved tools for annotation and comparative genomics of bacteriophage genomes, we developed multiPhATE2. As an extension of the multiPhATE code, multiPhATE2 includes comparative genomics codes for gene matching among sets of input bacteriophage genomes, and scales well to large input data sets due to incorporation of multiprocessing in the functional annotation and comparative genomics subsystems. Furthermore, additional search algorithms and databases have been added to the functional annotation subsystem. MultiPhATE2 was implemented in Python 3.7, and runs as a command-line code under Linux or MAC-OS.
- Short Name / Acronym:
- multiPhATE2
- Site Accession Number:
- LLNL-CODE- 818246
- Software Type:
- Scientific
- License(s):
- GNU General Public License v3.0
- Research Organization:
- Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
- Sponsoring Organization:
- USDOE National Nuclear Security Administration (NNSA)Primary Award/Contract Number:AC52-07NA27344
- DOE Contract Number:
- AC52-07NA27344
- Code ID:
- 68207
- OSTI ID:
- code-68207
- Country of Origin:
- United States
Similar Records
MultiPhATE2: code for functional annotation and comparison of phage genomes
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Journal Article
·
Wed Mar 17 00:00:00 EDT 2021
· G3
·
OSTI ID:1862740
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
Journal Article
·
Tue May 14 00:00:00 EDT 2019
· Bioinformatics
·
OSTI ID:1602659
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Journal Article
·
Mon Jun 22 00:00:00 EDT 2020
· BMC Bioinformatics
·
OSTI ID:1646625