GenomeDepot v1.0
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
GenomeDepot is a web-based platform for annotation, management, and comparative analysis of microbial genomic sequences and associated data including ortholog families, protein domains, operons, regulatory interactions, strain taxonomy, and sample metadata. GenomeDepot supports rapid creation of web-sites for user-defined genome collections that include bioinformatic tools for interactive genome browsing, BLAST search, annotation search, comparative genomic neighborhood visualization, and sequence download. Gene function annotations are generated by a customizable annotation pipeline. The pipeline runs annotation tools in Conda environments and can be easily extended with additional user-specified tools.
- Site Accession Number:
- 2025-194
- Software Type:
- Scientific
- License(s):
- GNU General Public License v3.0
- Research Organization:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- USDOEPrimary Award/Contract Number:AC02-05CH11231
- DOE Contract Number:
- AC02-05CH11231
- Code ID:
- 162195
- OSTI ID:
- code-162195
- Country of Origin:
- United States
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