Automated Eukaryotic Gene Structure Annotation Using EVidenceModeler and the Program to Assemble Spliced Alignments
Journal Article
·
· Genome Biology, n/a, no. 9, January 11, 2008, r7
OSTI ID:941402
EVidenceModeler (EVM) is presented as an automated eukaryotic gene structure annotation tool that reports eukaryotic gene structures as a weighted consensus of all available evidence. EVM, when combined with the Program to Assemble Spliced Alignments (PASA), yields a comprehensive, configurable annotation system that predicts protein-coding genes and alternatively spliced isoforms. Our experiments on both rice and human genome sequences demonstrate that EVM produces automated gene structure annotation approaching the quality of manual curation.
- Research Organization:
- Lawrence Livermore National Laboratory (LLNL), Livermore, CA
- Sponsoring Organization:
- USDOE
- DOE Contract Number:
- W-7405-ENG-48
- OSTI ID:
- 941402
- Report Number(s):
- UCRL-JRNL-237232
- Journal Information:
- Genome Biology, n/a, no. 9, January 11, 2008, r7, Journal Name: Genome Biology, n/a, no. 9, January 11, 2008, r7 Journal Issue: 1 Vol. 9
- Country of Publication:
- United States
- Language:
- English
Similar Records
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
nGASP - the nematode genome annotation assessment project
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome
Journal Article
·
Thu Jan 10 19:00:00 EST 2008
· GenomeBiology.com
·
OSTI ID:1626724
nGASP - the nematode genome annotation assessment project
Journal Article
·
Thu Dec 18 23:00:00 EST 2008
· nGASP - the nematode genome annotation assessment project, vol. 9, N/A, December 1, 2008, pp. 549
·
OSTI ID:950645
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome
Journal Article
·
Sat Jun 13 20:00:00 EDT 2020
· Animal Genetics
·
OSTI ID:1816108