Automatic annotation of organellar genomes with DOGMA
Journal Article
·
· Bioinformatics
Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of extra-nuclear organellar (chloroplast and animal mitochondrial) genomes. It is a web-based package that allows the use of comparative BLAST searches to identify and annotate genes in a genome. DOGMA presents a list of putative genes to the user in a graphical format for viewing and editing. Annotations are stored on our password-protected server. Complete annotations can be extracted for direct submission to GenBank. Furthermore, intergenic regions of specified length can be extracted, as well the nucleotide sequences and amino acid sequences of the genes.
- Research Organization:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- USDOE Director. Office of Science. Office of Biological and Environmental Research; National Science Foundation Integrative Graduate Education and Research Traineeship Grant 0114387 and Grant DEB0120709 (US)
- DOE Contract Number:
- AC03-76SF00098
- OSTI ID:
- 836973
- Report Number(s):
- LBNL-55411; R&D Project: LWEGLS; TRN: US200504%%420
- Journal Information:
- Bioinformatics, Vol. 20, Issue 17; Other Information: Submitted to Bioinformatics: Volume 20, No.17; Journal Publication Date: 11/22/2004; PBD: 1 Jun 2004
- Country of Publication:
- United States
- Language:
- English
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