Conformational structure of the amphipathic peptide insecticide L-KALA
Journal Article
·
· International Journal of Quantum Chemistry
- Panjab Univ., Chandigarh (India)
The conformation structure of the tetrapeptide Ac-Lys-Ala-Leu-Ala-OMe, the repeat unit of a 30 residue peptide YAA(KALA){sub 6}LAA, and also its analog containing an unusual amino acid, (Aib): Ac-Lys-Aib-Leu-Aib-OMe, has been investigated by the PCILO method. The global/low-energy minima for all the residues lies at {phi} = -30{degrees} and {psi} = 120{degrees}. In this conformation, the potential hydrogen-bonding sites are free, i.e., capable of intermolecular hydrogen bonding. As the angles lie closer to the collagen helical region and potential hydrogen-bonding sites are free, this structure is named the collagen-type helix. In aqueous solution, this structure is stabilized by salvation of the peptide bond. The local-energy minimum in all maps correspond to the right-handed helical region. The helix thus formed generates a pore of 3 {Angstrom} along the helix axis, with one lateral hydrophobic side and the other hydrophilic side. The pore thus formed is cation-selective and accounts for the leakage of contents from vesicles. On the basis of the length of the helix and placement of the side chains of lysine and leucine, a model has been proposed for the aggregation and fusion of the vesicles. The amphipathic basic residues interact with the head groups of the acidic liposomes by extending toward the polar face of the helix to insert their charged moieties by overcoming the electrostatic repulsive forces between the opposing vesicles. 40 refs., 6 figs.
- Sponsoring Organization:
- USDOE
- OSTI ID:
- 459113
- Journal Information:
- International Journal of Quantum Chemistry, Journal Name: International Journal of Quantum Chemistry Journal Issue: 1 Vol. 55; ISSN IJQCB2; ISSN 0020-7608
- Country of Publication:
- United States
- Language:
- English
Similar Records
Modular design of synthetic protein mimics. Characterization of the helical conformation of a 13-residue peptide in crystals
Stabilization of the fibrous structure of an {alpha}-helix-forming peptide by sequence reversal
Journal Article
·
Tue Aug 08 00:00:00 EDT 1989
· Biochemistry; (USA)
·
OSTI ID:5161348
Stabilization of the fibrous structure of an {alpha}-helix-forming peptide by sequence reversal
Journal Article
·
Fri Jun 03 00:00:00 EDT 2005
· Biochemical and Biophysical Research Communications
·
OSTI ID:20709217