The human {alpha}2(XI) collagen gene (COL11A2): Completion of coding information, identification of the promoter sequence, and precise localization within the major histocompatibility complex reveal overlap with the KE5 gene

Journal Article · Tue Mar 05 04:00:00 EST 1996 · Genomics

DOI:https://doi.org/10.1006/geno.1996.0135· OSTI ID:459007

Lui, V C.H.; Ng, Ling Jim; Sat, E W.Y.; Cheah, K S.E. ^[1]

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1. Univ. of Hong Kong (Hong Kong)

Type XI collagen, a fibril-forming collagen, is important for the integrity and development of the skeleton because mutations in the genes encoding its consituent {alpha} chains have been found in some osteochondrodysplasias. We provide data that complete information for the coding sequence of human {alpha}2(XI) procollagen, with details of the promoter region and intron-exon organization at the 5{prime} and 3{prime} ends of the gene (COL11A2), including the transcription start and polyadenylation sites. COL11A2 is 30.5 kb with a minimum of 62 exons, differing from other reported fibrillar collagen genes because the amino propeptide is encoded by 14 not 5 to 8 exons. But exon numbers for the carboxy propeptide and 3{prime}-untranslated region are conserved. The promoter region of COL11A2 lacks a TATA box but is GC-rich with two potential SP1 binding sites. Mouse {alpha}2(XI) collagen mRNAs undergo complex alternative splicing involving three amino-terminal propeptide exons but only one of these has been reported for COL11A2. We have located these missing human exons and have identified splice signals that point to additional splice variants. We have precisely mapped COL11A2 within the major histocompatibility complex on chromosome 6. The retinoid X receptor {beta} (RXR{beta}) gene is located 1.1 kb upstream of COL11A2. KE5, previously thought to be a distinct transcribed gene sequence, was mapped within COL11A2 in the alternatively spliced region, raising the question whether KE5 and COL11A2 are separate genes. 37 refs., 7 figs., 1 tab.

• OSTI ID: 459007
• Journal Information: Genomics, Journal Name: Genomics Journal Issue: 3 Vol. 32; ISSN 0888-7543; ISSN GNMCEP
• Country of Publication: United States
• Language: English

Related Subjects

55 BIOLOGY AND MEDICINE
BASIC STUDIES
CHROMOSOMES
COLLAGEN
DNA HYBRIDIZATION
DNA SEQUENCING
EXONS
GENE MUTATIONS
GENETIC MAPPING
HISTOCOMPATIBILITY COMPLEX
HUMAN CHROMOSOME 6
MICE
NUCLEOTIDES
ONTOGENESIS
PEPTIDES
POLYMERIZATION
SIZE
SKELETON
SPLICING
STRUCTURE-ACTIVITY RELATIONSHIPS
TRANSCRIPTION