BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
- Division of Plant Sciences, School of Life Sciences, University of Dundee at the James Hutton Institute, Dundee, United Kingdom
- GLBRC - University of Wisconsin
A high confidence barley reference transcript dataset consisting of 60,444 genes with 177,240 transcripts has been generated. Compared to current barley transcripts, BaRTv1.0 transcripts are generally longer, have less fragmentation and improved gene models that are well supported by splice junction reads. Precise transcript quantification using BaRTv1.0 allows routine analysis of gene expression and AS.
- Research Organization:
- Great Lakes Bioenergy Research Center (GLBRC), Madison, WI (United States)
- Sponsoring Organization:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- DOE Contract Number:
- SC0018409
- OSTI ID:
- 3003555
- Country of Publication:
- United States
- Language:
- English
Similar Records
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Characterization and Improvement of RNA-Seq Precision in Quantitative Transcript Expression Profiling
Defining the maize transcriptome de novo using deep RNA-Seq
Journal Article
·
Thu Jul 07 00:00:00 EDT 2022
· Genome Biology (Online)
·
OSTI ID:1904476
Characterization and Improvement of RNA-Seq Precision in Quantitative Transcript Expression Profiling
Journal Article
·
Fri Jul 01 00:00:00 EDT 2011
· Bioinformatics, 27(13):I383-I391
·
OSTI ID:1023181
Defining the maize transcriptome de novo using deep RNA-Seq
Conference
·
Wed Jun 01 00:00:00 EDT 2011
·
OSTI ID:1050660