Identification of pleiotropic loci mediating structural and non-structural carbohydrate accumulation within the sorghum bioenergy association panel using high-throughput markers

Kumar, Neeraj; Boatwright, J. Lucas; Boyles, Richard E.; Brenton, Zachary W.; Kresovich, Stephen

doi:10.3389/fpls.2024.1356619

Identification of pleiotropic loci mediating structural and non-structural carbohydrate accumulation within the sorghum bioenergy association panel using high-throughput markers

Journal Article · Tue Feb 27 23:00:00 EST 2024 · Frontiers in Plant Science

DOI:https://doi.org/10.3389/fpls.2024.1356619· OSTI ID:2580280

Kumar, Neeraj ^[1]; Boatwright, J. Lucas ^[1]; Boyles, Richard E. ^[2]; Brenton, Zachary W. ^[1]; Kresovich, Stephen ^[3]

Clemson Univ., SC (United States)
Clemson Univ., SC (United States); Clemson Univ., Florence, SC (United States)
Clemson Univ., SC (United States); Cornell Univ., Ithaca, NY (United States)

Molecular characterization of diverse germplasm can contribute to breeding programs by increasing genetic gain for sorghum [Sorghum bicolor (L.) Moench] improvement. Identifying novel marker-trait associations and candidate genes enriches the existing genomic resources and can improve bioenergy-related traits using genomic-assisted breeding. In the current scenario, identifying the genetic loci underlying biomass and carbon partitioning is vital for ongoing efforts to maximize each carbon sink’s yield for bioenergy production. Here, we have processed a high-density genomic marker (22 466 550) data based on whole-genome sequencing (WGS) using a set of 365 accessions from the bioenergy association panel (BAP), which includes ~19.7 million (19 744 726) single nucleotide polymorphism (SNPs) and 2.7 million (~2 721 824) insertion deletions (indels). A set of high-quality filtered SNP (~5.48 million) derived markers facilitated the assessment of population structure, genetic diversity, and genome-wide association studies (GWAS) for various traits related to biomass and its composition using the BAP. The phenotypic traits for GWAS included seed color (SC), plant height (PH), days to harvest (DTH), fresh weight (FW), dry weight (DW), brix content % (BRX), neutral detergent fiber (NDF), acid detergent fiber (ADF), non-fibrous carbohydrate (NFC), and lignin content. Several novel loci and candidate genes were identified for bioenergy-related traits, and some well-characterized genes for plant height (Dw1 and Dw2) and the YELLOW SEED1 locus (Y1) were validated. We further performed a multi-variate adaptive shrinkage analysis to identify pleiotropic QTL, which resulted in several shared marker-trait associations among bioenergy and compositional traits. Significant marker-trait associations with pleiotropic effects can be used to develop molecular markers for trait improvement using a marker-assisted breeding approach. Significant nucleotide diversity and heterozygosity were observed between photoperiod-sensitive and insensitive individuals of the panel. This diverse bioenergy panel with genomic resources will provide an excellent opportunity for further genetic studies, including selecting parental lines for superior hybrid development to improve biomass-related traits in sorghum.

View Accepted Manuscript (DOE)

Research Organization:: Clemson Univ., SC (United States)

Sponsoring Organization:: USDOE Advanced Research Projects Agency - Energy (ARPA-E)

Grant/Contract Number:: AR0001134

OSTI ID:: 2580280

Journal Information:: Frontiers in Plant Science, Journal Name: Frontiers in Plant Science Vol. 15; ISSN 1664-462X

Publisher:: Frontiers Media SACopyright Statement

Country of Publication:: United States

Language:: English

References (79)

From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline Auwera, Geraldine A.; Carneiro, Mauricio O.; Hartl, Christopher Current Protocols in Bioinformatics, Vol. 43, Issue 1 https://doi.org/10.1002/0471250953.bi1110s43	journal	October 2013
Impact of sorghum racial structure and diversity on genomic prediction of grain yield components Sapkota, Sirjan; Boyles, Richard; Cooper, Elizabeth Crop Science, Vol. 60, Issue 1 https://doi.org/10.1002/csc2.20060	journal	January 2020
Location of major effect genes in sorghum (Sorghum bicolor (L.) Moench) Mace, E. S.; Jordan, D. R. Theoretical and Applied Genetics, Vol. 121, Issue 7 https://doi.org/10.1007/s00122-010-1392-8	journal	June 2010
QTL for fibre-related traits in grain × sweet sorghum as a tool for the enhancement of sorghum as a biomass crop Shiringani, Amukelani L.; Friedt, Wolfgang Theoretical and Applied Genetics, Vol. 123, Issue 6 https://doi.org/10.1007/s00122-011-1642-4	journal	July 2011
Supermodels: sorghum and maize provide mutual insight into the genetics of flowering time Mace, E. S.; Hunt, C. H.; Jordan, D. R. Theoretical and Applied Genetics, Vol. 126, Issue 5 https://doi.org/10.1007/s00122-013-2059-z	journal	March 2013
Genetic dissection of temperature-dependent sorghum growth during juvenile development Fiedler, Karin; Bekele, Wubishet A.; Duensing, Ria Theoretical and Applied Genetics, Vol. 127, Issue 9 https://doi.org/10.1007/s00122-014-2350-7	journal	July 2014
Stability and genetic control of morphological, biomass and biofuel traits under temperate maritime and continental conditions in sweet sorghum (Sorghum bicolour) Mocoeur, Anne; Zhang, Yu-Miao; Liu, Zhi-Quan Theoretical and Applied Genetics, Vol. 128, Issue 9 https://doi.org/10.1007/s00122-015-2538-5	journal	May 2015
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies Chen, Xinwei; Lewandowska, Dominika; Armstrong, Miles R. Theoretical and Applied Genetics, Vol. 131, Issue 6 https://doi.org/10.1007/s00122-018-3078-6	journal	March 2018
Identification of QTL for sugar-related traits in a sweet × grain sorghum (Sorghum bicolor L. Moench) recombinant inbred population Ritter, Kimberley B.; Jordan, David R.; Chapman, Scott C. Molecular Breeding, Vol. 22, Issue 3 https://doi.org/10.1007/s11032-008-9182-6	journal	April 2008
The Maturity Genes of Sorghum Quinby, J. R. Advances in Agronomy https://doi.org/10.1016/S0065-2113(08)60737-3	book	January 1967
Fast two-stage phasing of large-scale sequence data Browning, Brian L.; Tian, Xiaowen; Zhou, Ying The American Journal of Human Genetics, Vol. 108, Issue 10 https://doi.org/10.1016/j.ajhg.2021.08.005	journal	October 2021
Evaluation of medical stone amendment for the reduction of nitrogen loss and bioavailability of heavy metals during pig manure composting Wang, Quan; Wang, Zhen; Awasthi, Mukesh Kumar Bioresource Technology, Vol. 220 https://doi.org/10.1016/j.biortech.2016.08.081	journal	November 2016
Sweet sorghum as a model system for bioenergy crops Calviño, Martín; Messing, Joachim Current Opinion in Biotechnology, Vol. 23, Issue 3 https://doi.org/10.1016/j.copbio.2011.12.002	journal	June 2012
rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated tool for Genome-Wide Association Study Yin, Lilin; Zhang, Haohao; Tang, Zhenshuang Genomics, Proteomics & Bioinformatics https://doi.org/10.1016/j.gpb.2020.10.007	journal	March 2021
Identification of sorghum grain mold resistance loci through genome wide association mapping Nida, Habte; Girma, Gezahegn; Mekonen, Moges Journal of Cereal Science, Vol. 85 https://doi.org/10.1016/j.jcs.2018.12.016	journal	January 2019
Sweet sorghum-a promising alternative feedstock for biofuel production Ahmad Dar, Rouf; Ahmad Dar, Eajaz; Kaur, Ajit Renewable and Sustainable Energy Reviews, Vol. 82 https://doi.org/10.1016/j.rser.2017.10.066	journal	February 2018
Genome-wide association mapping of resistance to the sorghum aphid in Sorghum bicolor Punnuri, Somashekhar M.; Ayele, Addissu G.; Harris-Shultz, Karen R. Genomics, Vol. 114, Issue 4 https://doi.org/10.1016/j.ygeno.2022.110408	journal	July 2022
Genome-Wide Association Study of Grain Polyphenol Concentrations in Global Sorghum [ Sorghum bicolor (L.) Moench] Germplasm Rhodes, Davina H.; Hoffmann, Leo; Rooney, William L. Journal of Agricultural and Food Chemistry, Vol. 62, Issue 45 https://doi.org/10.1021/jf503651t	journal	October 2014
Mixed linear model approach adapted for genome-wide association studies Zhang, Zhiwu; Ersoz, Elhan; Lai, Chao-Qiang Nature Genetics, Vol. 42, Issue 4 https://doi.org/10.1038/ng.546	journal	March 2010
A framework for variation discovery and genotyping using next-generation DNA sequencing data DePristo, Mark A.; Banks, Eric; Poplin, Ryan Nature Genetics, Vol. 43, Issue 5 https://doi.org/10.1038/ng.806	journal	April 2011
Efficient multivariate linear mixed model algorithms for genome-wide association studies Zhou, Xiang; Stephens, Matthew Nature Methods, Vol. 11, Issue 4 https://doi.org/10.1038/nmeth.2848	journal	February 2014
RNA-Seq: a revolutionary tool for transcriptomics Wang, Zhong; Gerstein, Mark; Snyder, Michael Nature Reviews Genetics, Vol. 10, Issue 1 https://doi.org/10.1038/nrg2484	journal	January 2009
Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions Urbut, Sarah M.; Wang, Gao; Carbonetto, Peter Nature Genetics, Vol. 51, Issue 1 https://doi.org/10.1038/s41588-018-0268-8	journal	November 2018
Quantitative trait locus mapping of the transpiration ratio related to preflowering drought tolerance in sorghum (Sorghum bicolor) Kapanigowda, Mohankumar H.; Payne, William A.; Rooney, William L. Functional Plant Biology, Vol. 41, Issue 11 https://doi.org/10.1071/FP13363	journal	January 2014
Population genomic and genome-wide association studies of agroclimatic traits in sorghum Morris, G. P.; Ramu, P.; Deshpande, S. P. Proceedings of the National Academy of Sciences, Vol. 110, Issue 2 https://doi.org/10.1073/pnas.1215985110	journal	December 2012
An Index and Test of Linear Moderated Mediation Hayes, Andrew F. Multivariate Behavioral Research, Vol. 50, Issue 1 https://doi.org/10.1080/00273171.2014.962683	journal	January 2015
Fast and accurate long-read alignment with Burrows–Wheeler transform Li, Heng; Durbin, Richard Bioinformatics, Vol. 26, Issue 5 https://doi.org/10.1093/bioinformatics/btp698	journal	January 2010
The variant call format and VCFtools Danecek, P.; Auton, A.; Abecasis, G. Bioinformatics, Vol. 27, Issue 15 https://doi.org/10.1093/bioinformatics/btr330	journal	June 2011
False discovery rates: a new deal Stephens, Matthew Biostatistics https://doi.org/10.1093/biostatistics/kxw041	journal	October 2016
Genetic characterization of a Sorghum bicolor multiparent mapping population emphasizing carbon-partitioning dynamics Boatwright, J. Lucas; Brenton, Zachary W.; Boyles, Richard E. G3 Genes\|Genomes\|Genetics, Vol. 11, Issue 4 https://doi.org/10.1093/g3journal/jkab060	journal	March 2021
Genomic patterns of structural variation among diverse genotypes of Sorghum bicolor and a potential role for deletions in local adaptation Songsomboon, Kittikun; Brenton, Zachary; Heuser, James G3 Genes\|Genomes\|Genetics, Vol. 11, Issue 7 https://doi.org/10.1093/g3journal/jkab154	journal	May 2021
QTL mapping for bioenergy traits in sweet sorghum recombinant inbred lines Souza, Vander Fillipe de; Pereira, Guilherme da Silva; Pastina, Maria Marta G3 Genes\|Genomes\|Genetics, Vol. 11, Issue 11 https://doi.org/10.1093/g3journal/jkab314	journal	September 2021
Twelve years of SAMtools and BCFtools Danecek, Petr; Bonfield, James K.; Liddle, Jennifer GigaScience, Vol. 10, Issue 2 https://doi.org/10.1093/gigascience/giab008	journal	January 2021
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data McKenna, A.; Hanna, M.; Banks, E. Genome Research, Vol. 20, Issue 9 https://doi.org/10.1101/gr.107524.110	journal	July 2010
Evaluation of Brix and sugar content in stem juice from sorghum varieties Kawahigashi, Hiroyuki; Kasuga, Shigemitsu; Okuizumi, Hisahito Grassland Science, Vol. 59, Issue 1 https://doi.org/10.1111/grs.12006	journal	January 2013
Geographical Patterns of Morphological Variation in Sorghum (Sorghum Bicolor (L.) Moench) Germplasm from Ethiopia and Eritrea: Qualitative Characters Ayana, Amsalu; Bekele, Endashaw Hereditas, Vol. 129, Issue 3 https://doi.org/10.1111/j.1601-5223.1998.t01-1-00195.x	journal	May 2004
Genome-Wide Analysis of WOX Gene Family in Rice, Sorghum, Maize, Arabidopsis and Poplar Zhang, Xin; Zong, Jie; Liu, Jianhua Journal of Integrative Plant Biology, Vol. 52, Issue 11 https://doi.org/10.1111/j.1744-7909.2010.00982.x	journal	October 2010
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Benjamini, Yoav; Hochberg, Yosef Journal of the Royal Statistical Society: Series B (Methodological), Vol. 57, Issue 1 https://doi.org/10.1111/j.2517-6161.1995.tb02031.x	journal	January 1995
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization McCormick, Ryan F.; Truong, Sandra K.; Sreedasyam, Avinash The Plant Journal, Vol. 93, Issue 2 https://doi.org/10.1111/tpj.13781	journal	December 2017
Genetic and genomic resources of sorghum to connect genotype with phenotype in contrasting environments Boyles, Richard E.; Brenton, Zachary W.; Kresovich, Stephen The Plant Journal, Vol. 97, Issue 1 https://doi.org/10.1111/tpj.14113	journal	December 2018
Sorghum Association Panel whole‐genome sequencing establishes cornerstone resource for dissecting genomic diversity Boatwright, J. Lucas; Sapkota, Sirjan; Jin, Hongyu The Plant Journal, Vol. 111, Issue 3 https://doi.org/10.1111/tpj.15853	journal	July 2022
Structure of Linkage Disequilibrium in Plants Flint-Garcia, Sherry A.; Thornsberry, Jeffry M.; Buckler, Edward S. Annual Review of Plant Biology, Vol. 54, Issue 1 https://doi.org/10.1146/annurev.arplant.54.031902.134907	journal	June 2003
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation Alexander, David H.; Lange, Kenneth BMC Bioinformatics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2105-12-246	journal	June 2011
ZINC-INDUCED FACILITATOR-LIKE family in plants: lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs Ricachenevsky, Felipe K.; Sperotto, Raul A.; Menguer, Paloma K. BMC Plant Biology, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2229-11-20	journal	January 2011
Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum Gelli, Malleswari; Mitchell, Sharon E.; Liu, Kan BMC Plant Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12870-015-0696-x	journal	January 2016
Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress Chopra, Ratan; Burow, Gloria; Burke, John J. BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-016-0966-2	journal	January 2017
Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies Liu, Xiaolei; Huang, Meng; Fan, Bin PLOS Genetics, Vol. 12, Issue 2 https://doi.org/10.1371/journal.pgen.1005767	journal	February 2016
A SUPER Powerful Method for Genome Wide Association Study Wang, Qishan; Tian, Feng; Pan, Yuchun PLoS ONE, Vol. 9, Issue 9 https://doi.org/10.1371/journal.pone.0107684	journal	September 2014
Genetic Structure and Linkage Disequilibrium in a Diverse, Representative Collection of the C4 Model Plant, Sorghum bicolor Wang, Yi-Hong; Upadhyaya, Hari D.; Burrell, A. Millie G3 Genes\|Genomes\|Genetics, Vol. 3, Issue 5 https://doi.org/10.1534/g3.112.004861	journal	May 2013
Multiparental Mapping of Plant Height and Flowering Time QTL in Partially Isogenic Sorghum Families Higgins, R. H.; Thurber, C. S.; Assaranurak, I. G3: Genes\|Genomes\|Genetics, Vol. 4, Issue 9 https://doi.org/10.1534/g3.114.013318	journal	September 2014
Comparative Genetics of Seed Size Traits in Divergent Cereal Lineages Represented by Sorghum (Panicoidae) and Rice (Oryzoidae) Zhang, D.; Li, J.; Compton, R. O. G3: Genes\|Genomes\|Genetics, Vol. 5, Issue 6 https://doi.org/10.1534/g3.115.017590	journal	March 2015
Genome-Wide Association Mapping of Anthracnose ( Colletotrichum sublineolum ) Resistance in NPGS Ethiopian Sorghum Germplasm Cuevas, Hugo E.; Prom, Louis K.; Cruet-Burgos, Clara M. G3 Genes\|Genomes\|Genetics, Vol. 9, Issue 9 https://doi.org/10.1534/g3.119.400350	journal	September 2019
Efficient Mapping of Plant Height Quantitative Trait Loci in a Sorghum Association Population With Introgressed Dwarfing Genes Brown, Patrick J.; Rooney, William L.; Franks, Cleve Genetics, Vol. 180, Issue 1 https://doi.org/10.1534/genetics.108.092239	journal	August 2008
A Genomic Resource for the Development, Improvement, and Exploitation of Sorghum for Bioenergy Brenton, Zachary W.; Cooper, Elizabeth A.; Myers, Mathew T. Genetics, Vol. 204, Issue 1 https://doi.org/10.1534/genetics.115.183947	journal	June 2016
Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean MacQueen, Alice H.; White, Jeffrey W.; Lee, Rian Genetics, Vol. 215, Issue 1 https://doi.org/10.1534/genetics.120.303038	journal	May 2020
Comparative Population Genetics of the Panicoid Grasses: Sequence Polymorphism, Linkage Disequilibrium and Selection in a Diverse Sample of Sorghum bicolor Hamblin, Martha T.; Mitchell, Sharon E.; White, Gemma M. Genetics, Vol. 167, Issue 1 https://doi.org/10.1534/genetics.167.1.471	journal	May 2004
Temperature and Photoperiod Effects Mediated by the Sorghum Maturity Genes Major, D. J.; Rood, S. B.; Miller, F. R. Crop Science, Vol. 30, Issue 2 https://doi.org/10.2135/cropsci1990.0011183X003000020012x	journal	January 1990
Genetic Control of a Photoperiod-Sensitive Response in Sorghum bicolor (L.) Moench Rooney, W. L.; Aydin, S. Crop Science, Vol. 39, Issue 2 https://doi.org/10.2135/cropsci1999.0011183X0039000200016x	journal	January 1999
Community Resources and Strategies for Association Mapping in Sorghum Casa, Alexandra M.; Pressoir, Gael; Brown, Patrick J. Crop Science, Vol. 48, Issue 1 https://doi.org/10.2135/cropsci2007.02.0080	journal	January 2008
The Effect of Tropical Sorghum Conversion and Inbred Development on Genome Diversity as Revealed by High-Resolution Genotyping Klein, Robert R.; Mullet, John E.; Jordan, David R. Crop Science, Vol. 48, Issue Supplement_1 https://doi.org/10.2135/cropsci2007.06.0319tpg	journal	January 2008
Genetic Improvement of Sorghum as a Biofuel Feedstock: I. QTL for Stem Sugar and Grain Nonstructural Carbohydrates Murray, Seth C.; Sharma, Arun; Rooney, William L. Crop Science, Vol. 48, Issue 6 https://doi.org/10.2135/cropsci2008.01.0016	journal	January 2008
Genetic Improvement of Sorghum as a Biofuel Feedstock: II. QTL for Stem and Leaf Structural Carbohydrates Murray, Seth C.; Rooney, William L.; Mitchell, Sharon E. Crop Science, Vol. 48, Issue 6 https://doi.org/10.2135/cropsci2008.01.0068	journal	January 2008
Genetic Support for Phenotype-based Racial Classification in Sorghum Brown, Patrick J.; Myles, Sean; Kresovich, Stephen Crop Science, Vol. 51, Issue 1 https://doi.org/10.2135/cropsci2010.03.0179	journal	January 2011
QTLs for Energy-related Traits in a Sweet × Grain Sorghum [ (L.) Moench] Mapping Population Felderhoff, T. J.; Murray, S. C.; Klein, P. E. Crop Science, Vol. 52, Issue 5 https://doi.org/10.2135/cropsci2011.11.0618	journal	January 2012
Sequencing of an Anthracnose-Resistant Sorghum Genotype and Mapping of a Major QTL Reveal Strong Candidate Genes for Anthracnose Resistance Burrell, A. Millie; Sharma, Arun; Patil, Nikhil Y. Crop Science, Vol. 55, Issue 2 https://doi.org/10.2135/cropsci2014.06.0430	journal	March 2015
Quantitative Trait Loci Mapping of Agronomic and Yield Traits in Two Grain Sorghum Biparental Families Boyles, Richard E.; Pfeiffer, Brian K.; Cooper, Elizabeth A. Crop Science, Vol. 57, Issue 5 https://doi.org/10.2135/cropsci2016.12.0988	journal	June 2017
Discovering useful genetic variation in the seed parent gene pool for sorghum improvement Kumar, Neeraj; Boatwright, J. Lucas; Sapkota, Sirjan Frontiers in Genetics, Vol. 14 https://doi.org/10.3389/fgene.2023.1221148	journal	September 2023
Genome-Wide Association Studies for Five Forage Quality-Related Traits in Sorghum (Sorghum bicolor L.) Li, Jieqin; Tang, Weijie; Zhang, Ya-Wen Frontiers in Plant Science, Vol. 9 https://doi.org/10.3389/fpls.2018.01146	journal	August 2018
A Large-Scale Genome-Wide Association Analyses of Ethiopian Sorghum Landrace Collection Reveal Loci Associated With Important Traits Girma, Gezahegn; Nida, Habte; Seyoum, Amare Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.00691	journal	May 2019
Genome-Wide Association Study for Biomass Related Traits in a Panel of Sorghum bicolor and S. bicolor × S. halepense Populations Habyarimana, Ephrem; De Franceschi, Paolo; Ercisli, Sezai Frontiers in Plant Science, Vol. 11 https://doi.org/10.3389/fpls.2020.551305	journal	November 2020
Dissecting the Genetic Architecture of Carbon Partitioning in Sorghum Using Multiscale Phenotypes Boatwright, J. Lucas; Sapkota, Sirjan; Myers, Matthew Frontiers in Plant Science, Vol. 13 https://doi.org/10.3389/fpls.2022.790005	journal	May 2022
Genetic Dissection and Quantitative Trait Loci Mapping of Agronomic and Fodder Quality Traits in Sorghum Under Different Water Regimes Somegowda, Vinutha K.; Prasad, Kodukula V. S. V.; Naravula, Jalaja Frontiers in Plant Science, Vol. 13 https://doi.org/10.3389/fpls.2022.810632	journal	February 2022
Construction of a high-density genetic linkage map and QTL mapping for bioenergy-related traits in sweet sorghum [Sorghum bicolor (L.) Moench] Guden, Birgul; Yol, Engin; Erdurmus, Cengiz Frontiers in Plant Science, Vol. 14 https://doi.org/10.3389/fpls.2023.1081931	journal	June 2023
Status and Prospects of Association Mapping in Plants Zhu, Chengsong; Gore, Michael; Buckler, Edward S. The Plant Genome Journal, Vol. 1, Issue 1 https://doi.org/10.3835/plantgenome2008.02.0089	journal	January 2008
Sweet Sorghum Genetic Diversity and Association Mapping for Brix and Height Murray, Seth C.; Rooney, William L.; Hamblin, Martha T. The Plant Genome Journal, Vol. 2, Issue 1 https://doi.org/10.3835/plantgenome2008.10.0011	journal	January 2009
() Represses Sorghum Flowering in Long Days: Alleles Enhance Biomass Accumulation and Grain Production Murphy, Rebecca L.; Morishige, Daryl T.; Brady, Jeff A. The Plant Genome, Vol. 7, Issue 2 https://doi.org/10.3835/plantgenome2013.11.0040	journal	January 2014
Genome-Wide Association Study for Nine Plant Architecture Traits in Sorghum Zhao, Jing; Mantilla Perez, Maria B.; Hu, Jieyun The Plant Genome, Vol. 9, Issue 2 https://doi.org/10.3835/plantgenome2015.06.0044	journal	January 2016
Genome-Wide Association Mapping of Anthracnose ( Colletotrichum sublineolum ) Resistance in the U.S. Sorghum Association Panel Cuevas, Hugo E.; Prom, Louis K.; Cooper, Elizabeth A. The Plant Genome, Vol. 11, Issue 2 https://doi.org/10.3835/plantgenome2017.11.0099	journal	July 2018
An Integrated Genotyping‐by‐Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes Hu, Zhenbin; Olatoye, Marcus O.; Marla, Sandeep The Plant Genome, Vol. 12, Issue 1 https://doi.org/10.3835/plantgenome2018.06.0044	journal	March 2019

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