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Critical assessment of proteome-wide label-free absolute abundance estimation strategies
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journal
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July 2013 |
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Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq
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book
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January 2014 |
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Comparative genomic analysis of solvent extrusion pumps in Pseudomonas strains exhibiting different degrees of solvent tolerance
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journal
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October 2003 |
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Metabolic engineering of Pseudomonas putida for the production of various types of short-chain-length polyhydroxyalkanoates from levulinic acid
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journal
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August 2020 |
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Engineered Methylococcus capsulatus Bath for efficient methane conversion to isoprene
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journal
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February 2024 |
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A navigation guide of synthetic biology tools for Pseudomonas putida
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journal
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July 2021 |
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Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering
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journal
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September 2023 |
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Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications
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journal
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January 2023 |
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Generation of a catR deficient mutant of P. putida KT2440 that produces cis, cis-muconate from benzoate at high rate and yield
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journal
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December 2011 |
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Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance
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journal
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December 2020 |
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Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production
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journal
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December 2022 |
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Improving ethanol tolerance of Saccharomyces cerevisiae through adaptive laboratory evolution using high ethanol concentrations as a selective pressure
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journal
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January 2023 |
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Enhanced bio-synthesis of isoprene via modifying mevalonate and methylerythritol phosphate pathways for industrial application: A review
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journal
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July 2023 |
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Tolerance engineering in bacteria for the production of advanced biofuels and chemicals
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journal
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August 2015 |
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Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution
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journal
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January 2017 |
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Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism
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journal
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November 2018 |
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Development of 3-hydroxypropionic-acid-tolerant strain of Escherichia coli W and role of minor global regulator yieP
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journal
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May 2019 |
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The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology
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journal
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December 2019 |
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Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440
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journal
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May 2020 |
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Direct biosynthesis of adipic acid from lignin-derived aromatics using engineered Pseudomonas putida KT2440
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journal
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May 2020 |
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Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid
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journal
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November 2020 |
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Characterization of aromatic acid/proton symporters in Pseudomonas putida KT2440 toward efficient microbial conversion of lignin-related aromatics
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journal
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March 2021 |
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Engineering adipic acid metabolism in Pseudomonas putida
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journal
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September 2021 |
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Lepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuels
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journal
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November 2021 |
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Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network
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journal
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July 2022 |
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Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals
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journal
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March 2023 |
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Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida
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journal
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March 2024 |
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Vapor–Liquid Equilibria and Chemical Equilibria in the System (Formaldehyde + Water + Isoprenol)
|
journal
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March 2021 |
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Muconic Acid Production Using Engineered Pseudomonas putida KT2440 and a Guaiacol-Rich Fraction Derived from Kraft Lignin
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journal
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June 2021 |
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Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution
|
journal
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August 2021 |
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Production Cost and Carbon Footprint of Biomass-Derived Dimethylcyclooctane as a High-Performance Jet Fuel Blendstock
|
journal
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August 2021 |
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Identification of Key Drivers of Cost and Environmental Impact for Biomass-Derived Fuel for Advanced Multimode Engines Based on Techno-Economic and Life Cycle Analysis
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journal
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August 2022 |
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Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli
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journal
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January 2010 |
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Fast gapped-read alignment with Bowtie 2
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journal
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March 2012 |
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Biotechnological domestication of pseudomonads using synthetic biology
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journal
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April 2014 |
|
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
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journal
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October 2020 |
|
Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering
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journal
|
August 2022 |
|
Genome-wide analysis of the FleQ direct regulon in Pseudomonas fluorescens F113 and Pseudomonas putida KT2440
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journal
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September 2018 |
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Engineering Pseudomonas putida KT2440 for chain length tailored free fatty acid and oleochemical production
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journal
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December 2022 |
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[4 + 4]-cycloaddition of isoprene for the production of high-performance bio-based jet fuel
|
journal
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January 2019 |
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Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution
|
journal
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January 2020 |
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Global features of the Pseudomonas putida KT2440 genome sequence
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journal
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December 2002 |
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Lignin valorization through integrated biological funneling and chemical catalysis
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journal
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August 2014 |
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Improved bacterial recombineering by parallelized protein discovery
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journal
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May 2020 |
|
Latent Pathway Activation and Increased Pathway Capacity Enable Escherichia coli Adaptation to Loss of Key Metabolic Enzymes
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journal
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November 2005 |
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Absolute Quantification of Proteins by LCMS E : A Virtue of Parallel ms Acquisition
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journal
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October 2005 |
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Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida
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journal
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April 2015 |
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
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journal
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November 2021 |
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ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation
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journal
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October 2018 |
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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis : Re-annotation of the Pseudomonas putida KT2440 genome
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journal
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April 2016 |
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Understanding butanol tolerance and assimilation in P seudomonas putida BIRD-1: an integrated omics approach : An omics approach of butanol response in
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journal
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January 2016 |
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Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida
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journal
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January 2023 |
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Impact of fleQ Deficiency on Resource Allocation and Heterologous Gene Expression in Pseudomonas putida Across Various Growth Media
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journal
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November 2024 |
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Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies
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journal
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April 2017 |
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Role of Alcohols in Growth, Lipid Composition, and Membrane Fluidity of Yeasts, Bacteria, and Archaea
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journal
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July 2011 |
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Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing
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journal
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October 2020 |
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Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium
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journal
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October 2014 |
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Global Transcriptional Responses to Osmotic, Oxidative, and Imipenem Stress Conditions in Pseudomonas putida
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journal
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January 2017 |
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A Set of Activators and Repressors Control Peripheral Glucose Pathways in Pseudomonas putida To Yield a Common Central Intermediate
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journal
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February 2008 |
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Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate.
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journal
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September 1994 |
|
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440
|
journal
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March 2024 |
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Metabolic engineering of Escherichia coli for high-specificity production of isoprenol and prenol as next generation of biofuels
|
journal
|
January 2013 |
|
Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution
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journal
|
November 2017 |
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Engineering Pseudomonas putida for isoprenoid production by manipulating endogenous and shunt pathways supplying precursors
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journal
|
September 2019 |
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Insights into the susceptibility of Pseudomonas putida to industrially relevant aromatic hydrocarbons that it can synthesize from sugars
|
journal
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February 2023 |
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Robotic workflows for automated long-term adaptive laboratory evolution: improving ethanol utilization by Corynebacterium glutamicum
|
journal
|
September 2023 |
|
Bio-upcycling of even and uneven medium-chain-length diols and dicarboxylates to polyhydroxyalkanoates using engineered Pseudomonas putida
|
journal
|
February 2024 |
|
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
|
journal
|
December 2014 |
|
A Pseudomonas putida efflux pump acts on short-chain alcohols
|
journal
|
May 2018 |
|
Evolutionary engineering of E. coli MG1655 for tolerance against isoprenol
|
journal
|
November 2020 |
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Efficient lactic acid production from dilute acid-pretreated lignocellulosic biomass by a synthetic consortium of engineered Pseudomonas putida and Bacillus coagulans
|
journal
|
November 2021 |
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Engineering isoprenoids production in metabolically versatile microbial host Pseudomonas putida
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journal
|
December 2022 |
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Ethanol tolerance in engineered strains of Clostridium thermocellum
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journal
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September 2023 |
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Transformation of Pseudomonas putida by Electroporation
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journal
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January 1994 |
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Software for Computing and Annotating Genomic Ranges
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journal
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August 2013 |
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RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics
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journal
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September 2021 |
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Discovery proteomic (DIA) LC-MS/MS data acquisition and analysis V.2
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other
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September 2022 |
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Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution
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journal
|
August 2019 |
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Resistance to Bipyridyls Mediated by the TtgABC Efflux System in Pseudomonas putida KT2440
|
journal
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August 2020 |
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Involvement of the MxtR/ErdR (CrbS/CrbR) Two-Component System in Acetate Metabolism in Pseudomonas putida KT2440
|
journal
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July 2021 |