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Organic molecules are deterministically assembled in variably inundated river sediments, but drivers remain unclear

Journal Article · · Scientific Reports
 [1];  [2];  [2];  [2];  [2];  [2];  [2];  [2]
  1. Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Washington State University, Pullman, WA (United States)
  2. Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Dissolved organic matter (DOM) is central to ecosystem function. A fundamental challenge is understanding the processes leading to variation in the chemistry of organic molecules that comprise DOM. Here we study these processes in variably inundated riverbed sediments, as an understudied, yet ubiquitous component of rivers. Using null-model approaches adopted from community ecology, we found that within-site variation in environmental conditions caused non-random (i.e., deterministic) shifts in DOM chemistry. Deterministic shifts were observed across diverse biomes, though the strength of determinism varied substantially. We found that the strength of determinism decreased with increasing sediment moisture, but in the form of a constraint space. Many systems fell below the upper constraint boundary, however. We propose a conceptual model based on our results and other publications in which DOM assemblages are hypothesized to be increasingly deterministic across the continuum from the river water column to saturated sediment pore spaces to unsaturated and dry soils/sediments.
Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Earth & Environmental Systems Science (EESS)
Contributing Organization:
WHONDRS Consortium
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
2566029
Report Number(s):
PNNL-SA--189953
Journal Information:
Scientific Reports, Journal Name: Scientific Reports Journal Issue: 1 Vol. 15; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (72)

The effects of drying and re-flooding on the sediment and soil nutrient dynamics of lowland river-floodplain systems: a synthesis journal January 2000
Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications: HYPORHEIC FLOW AND TRANSPORT PROCESSES journal October 2014
Evaluating the performance of parallel subsurface simulators: An illustrative example with PFLOTRAN: Evaluating the Parallel Performance of Pflotran journal January 2014
A hydrogeomorphic river network model predicts where and why hyporheic exchange is important in large basins journal September 2014
River corridor science: Hydrologic exchange and ecological consequences from bedforms to basins: RIVER CORRIDORS FROM BEDFORMS TO BASINS journal September 2015
Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation journal December 2017
Determining long time-scale hyporheic zone flow paths in Antarctic streams journal January 2003
Flow and Sediment Connectivity in Semi-arid Landscapes in SE Spain: Patterns and Controls journal March 2015
Velocity-amplified microbial respiration rates in the lower Amazon River: Amazon River respiration journal February 2018
From mass to structure: an aromaticity index for high-resolution mass data of natural organic matter journal February 2006
Toward catchment hydro‐biogeochemical theories journal December 2020
Biogeochemical Hot Spots and Hot Moments at the Interface of Terrestrial and Aquatic Ecosystems journal June 2003
Modeling hyporheic zone processes journal September 2003
Sequential extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry journal June 2017
Expanding the role of reactive transport models in critical zone processes journal February 2017
Effects of moisture and salinity on soil dissolved organic matter and ecological risk of coastal wetland journal August 2020
MFAssignR: Molecular formula assignment software for ultrahigh resolution mass spectrometry analysis of environmental complex mixtures journal December 2020
River bed carbon and nitrogen cycling: State of play and some new directions journal September 2012
Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone journal November 2018
Ecological theory applied to environmental metabolomes reveals compositional divergence despite conserved molecular properties journal September 2021
Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains journal April 2017
Thermodynamic control on the decomposition of organic matter across different electron acceptors journal June 2024
Kendrick Mass Defect Spectrum:  A Compact Visual Analysis for Ultrahigh-Resolution Broadband Mass Spectra journal October 2001
Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry journal April 2015
Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra journal November 2017
Soil Organic Matter Characterization by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR MS): A Critical Review of Sample Preparation, Analysis, and Data Interpretation journal July 2021
Microbial and Environmental Processes Shape the Link between Organic Matter Functional Traits and Composition journal June 2022
Carbon Limitation Leads to Thermodynamic Regulation of Aerobic Metabolism journal May 2020
Land-Use Change and Environmental Properties Alter the Quantity and Molecular Composition of Soil-Derived Dissolved Organic Matter journal May 2021
Effect of water saturation in soil organic matter on the partition of organic compounds journal May 1992
Soil sorption of organic vapors and effects of humidity on sorptive mechanism and capacity journal December 1985
A multiscale model for integrating hyporheic exchange from ripples to meanders: A 3-D FLOW MODEL FOR HYPORHEIC EXCHANGE journal December 2010
Riparian biogeochemical hot moments induced by stream fluctuations: HYDROLOGICALLY DRIVEN RIPARIAN BUFFERING EFFECTS journal September 2012
Molecular Hysteresis: Hydrologically Driven Changes in Riverine Dissolved Organic Matter Chemistry During a Storm Event journal April 2019
Drought Conditions Maximize the Impact of High‐Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone journal October 2018
Spatial Microbial Respiration Variations in the Hyporheic Zones Within the Columbia River Basin journal November 2022
Stochastic and deterministic assembly processes in subsurface microbial communities journal March 2012
Quantifying community assembly processes and identifying features that impose them journal June 2013
Thermodynamically controlled preservation of organic carbon in floodplains journal May 2017
Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology journal February 2018
Land use driven change in soil pH affects microbial carbon cycling processes journal September 2018
River channel connectivity shifts metabolite composition and dissolved organic matter chemistry journal January 2019
Using metacommunity ecology to understand environmental metabolomes journal December 2020
The unknown biogeochemical impacts of drying rivers and streams journal November 2022
Global prevalence of non-perennial rivers and streams journal June 2021
Spatial and temporal variation of microbial respiration rates in a blackwater stream journal October 1996
Nutrient dynamics at the interface between surface waters and groundwaters journal November 1998
A mixing model analysis of stream solute dynamics and the contribution of a hyporheic zone to ecosystem function* journal June 2003
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession journal March 2015
Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter journal June 2023
Reconceptualizing the hyporheic zone for nonperennial rivers and streams journal June 2022
Pervasive changes in stream intermittency across the United States journal July 2021
Picante: R tools for integrating phylogenies and ecology journal April 2010
An Ecoregion-Based Approach to Protecting Half the Terrestrial Realm journal April 2017
Factors controlling hyporheic respiration in a desert stream journal August 1995
WHONDRS: a Community Resource for Studying Dynamic River Corridors journal October 2018
ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data journal March 2020
Data and scripts associated with the manuscript "Organic Molecules are Deterministically Assembled in River Sediments"
  • Stegen, James C.; Garayburu-Caruso, Vanessa A.; Danczak, Robert E.
  • Environmental System Science Data Infrastructure for a Virtual Ecosystem; Early Career Research Program: Watershed Perturbation-Response Traits Derived Through Ecological Theory - Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS) https://doi.org/10.15485/2367553
dataset January 2024
Hydrological and biogeochemical controls on watershed dissolved organic matter transport: pulse-shunt concept journal January 2016
Contribution of the Hyporheic Zone to Ecosystem Metabolism in a Prealpine Gravel-Bed-River journal December 1997
Functional Molecular Diversity of Marine Dissolved Organic Matter Is Reduced during Degradation journal June 2017
Estimating and mapping ecological processes influencing microbial community assembly journal May 2015
Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling journal October 2020
Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly journal February 2022
Coupled Biotic-Abiotic Processes Control Biogeochemical Cycling of Dissolved Organic Matter in the Columbia River Hyporheic Zone journal January 2021
Riverine organic matter functional diversity increases with catchment size journal July 2023
Exploring the determinants of organic matter bioavailability through substrate-explicit thermodynamic modeling journal July 2023
Using Community Science to Reveal the Global Chemogeography of River Metabolomes journal December 2020
A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater: SPE-DOM from seawater journal June 2008
Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history journal January 2017
Disturbance triggers non-linear microbe–environment feedbacks journal January 2021
Reviews and syntheses: Use and misuse of peak intensities from high resolution mass spectrometry in organic matter studies: opportunities for robust usage preprint October 2022