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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days

Journal Article · · Scientific Data (Online)
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  1. Univ. of Washington, Seattle, WA (United States)
  2. Georgia Institute of Technology, Atlanta, GA (United States)
  3. Univ. of New Hampshire, Durham, NH (United States)
  4. Univ. of Washington, Seattle, WA (United States); Garfield High School, Seattle, WA (United States)
  5. USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
+ Show Author Affiliations
In May and June of 2021, marine microbial samples were collected for DNA sequencing in East Sound, WA, USA every 4 hours for 22 days. This high temporal resolution sampling effort captured the last 3 days of a Rhizosolenia sp. bloom, the initiation and complete bloom cycle of Chaetoceros socialis (8 days), and the following bacterial bloom (2 days). Metagenomes were completed on the time series, and the dataset includes 128 size-fractionated microbial samples (0.22–1.2 µm), providing gene abundances for the dominant members of bacteria, archaea, and viruses. This dataset also has time-matched nutrient analyses, flow cytometry data, and physical parameters of the environment at a single point of sampling within a coastal ecosystem that experiences regular bloom events, facilitating a range of modeling efforts that can be leveraged to understand microbial community structure and their influences on the growth, maintenance, and senescence of phytoplankton blooms.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Joint Genome Institute (JGI); USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF); USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science (BSS)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
2480652
Alternate ID(s):
OSTI ID: 2481482
Journal Information:
Scientific Data (Online), Journal Name: Scientific Data (Online) Journal Issue: 1 Vol. 11; ISSN 2052-4463
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

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Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
Journal Article · Sun Jul 21 20:00:00 EDT 2019 · Scientific Data · OSTI ID:1559811

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
marine biology
water microbiology