Plant-specific microbial diversity facilitates functional redundancy at the soil-root interface

Wicaksono, Wisnu Adi; Köberl, Martina; White, III, Richard Allen; Jansson, Janet K.; Jansson, Christer; Cernava, Tomislav; Berg, Gabriele

doi:10.1007/s11104-024-07097-5

Plant-specific microbial diversity facilitates functional redundancy at the soil-root interface

Journal Article · Wed Dec 04 23:00:00 EST 2024 · Plant and Soil

DOI:https://doi.org/10.1007/s11104-024-07097-5· OSTI ID:2479992

; Köberl, Martina; White, III, Richard Allen; Jansson, Janet K.; Jansson, Christer; Cernava, Tomislav; Berg, Gabriele

Abstract Aims

Plant-specific microbial diversity reflecting host-microbe coevolution was frequently shown at the structural level but less on the functional scale. We studied the microbiome of three compartments at the soil root interface (root endosphere, rhizosphere, bulk soil) of medicinal plants cultivated under organic management in Egypt. The study aimed to examine the impact of the rhizosphere on microbial community composition and diversity in desert agricultural soil, as well as to identify specific functions associated with the rhizosphere.

Methods

The microbiome community structure, diversity, and microbial functioning were evaluated through the utilization of 16S rRNA gene amplicon and shotgun metagenome sequencing.

Results

We found the typical rhizosphere effect and plant-species-specific enrichment of bacterial diversity. The annual plants Calendula officinalis and Matricaria chamomilla ( Asteraceae ) were more similar than the perennial Solanum distichum ( Solanaceae ). Altogether, plant species explained 50.5% of the variation in bacterial community structures in the rhizosphere. Our results indicate a stronger effect of the plant species in terms of modulating bacterial community structures in the rhizosphere than in root endosphere samples. The plant-driven rhizosphere effect could be linked to redundant plant beneficial functions in the microbiome, while enrichment of specific genes related to amino acid ion transport and metabolism, carbohydrate transport and metabolism, defense mechanisms, and secondary metabolites biosynthesis were more specific.

Conclusions

The study explores the microbiome continuum at the soil-root interface of medicinal plant species, revealing significant bacterial community structure shifts and plant specificity. The study provides insights into the essential microbiome components contributing to rhizosphere functionality.

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Sponsoring Organization:: USDOE

OSTI ID:: 2479992

Journal Information:: Plant and Soil, Journal Name: Plant and Soil; ISSN 0032-079X

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: Netherlands

Language:: English

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