Asgard archaea modulate potential methanogenesis substrates in wetland soil

Valentin-Alvarado, Luis E.; Appler, Kathryn E.; De Anda, Valerie; Schoelmerich, Marie C.; West-Roberts, Jacob; Kivenson, Veronika; Crits-Christoph, Alexander; Ly, Lynn; Sachdeva, Rohan; Greening, Chris; Savage, David F.; Baker, Brett J.; Banfield, Jillian F.

doi:10.1038/s41467-024-49872-z

Asgard archaea modulate potential methanogenesis substrates in wetland soil

Journal Article · Wed Jul 31 00:00:00 EDT 2024 · Nature Communications

DOI:https://doi.org/10.1038/s41467-024-49872-z· OSTI ID:2472052

^[1]; ^[2]; De Anda, Valerie ^[3]; Schoelmerich, Marie C. ^[4]; West-Roberts, Jacob ^[5]; Kivenson, Veronika ^[5]; Crits-Christoph, Alexander ^[6]; ^[7]; ^[5]; ^[8]; ^[5]; ^[3]; ^[9]

University of California, Berkeley, CA (United States); OSTI
University of Texas, Port Aransas, TX (United States)
University of Texas, Port Aransas, TX (United States); University of Texas, Austin, TX (United States)
University of California, Berkeley, CA (United States); ETH Zürich (Switzerland)
University of California, Berkeley, CA (United States)
Cultivarium, Watertown, MA (United States); University of California, Berkeley, CA (United States)
Oxford Nanopore Technologies Inc, New York, NY (United States)
Monash University, Clayton, VIC (Australia)
University of California, Berkeley, CA (United States); Monash University, Clayton, VIC (Australia)

The roles of Asgard archaea in eukaryogenesis and marine biogeochemical cycles are well studied, yet their contributions in soil ecosystems remain unknown. Of particular interest are Asgard archaeal contributions to methane cycling in wetland soils. To investigate this, we reconstructed two complete genomes for soil-associated Atabeyarchaeia, a new Asgard lineage, and a complete genome of Freyarchaeia, and predicted their metabolism in situ. Metatranscriptomics reveals expression of genes for [NiFe]-hydrogenases, pyruvate oxidation and carbon fixation via the Wood-Ljungdahl pathway. Also expressed are genes encoding enzymes for amino acid metabolism, anaerobic aldehyde oxidation, hydrogen peroxide detoxification and carbohydrate breakdown to acetate and formate. Overall, soil-associated Asgard archaea are predicted to include non-methanogenic acetogens, highlighting their potential role in carbon cycling in terrestrial environments.

View Accepted Manuscript (DOE)

Research Organization:: University of California, Oakland, CA (United States)

Sponsoring Organization:: Bill & Melinda Gates Foundation; Simons Foundation; USDOE Office of Science (SC)

Grant/Contract Number:: SC0016240

OSTI ID:: 2472052

Journal Information:: Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 15; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies Kang, Dongwan D.; Li, Feng; Kirton, Edward PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7359	journal	January 2019

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