Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Identification of synthetic consortia from a set of plant-beneficial bacteria

Journal Article · · Microbial Biotechnology (Online)
The use of microbial inoculants in agriculture as biofertilisers and/or biopesticides is an appealing alternative to replace or reduce the practice of agrochemicals. Plant microbiota studies are revealing the different bacterial groups which are populating plant microbiomes re-energising the plant probiotic bacteria (PPB) translational research sector. Some single-microbial strain bioinoculants have proven valid in agriculture (e.g., based on Trichoderma, mycorrhiza or rhizobia); however, it is now recommended to consider multistrain consortia since plant-beneficial effects are often a result of community-level interactions in plant microbiomes. A limiting step is the selection of a fitting combination of microbial strains in order to accomplish the best beneficial effect upon plant inoculation. In this study, we have used a subset of 23 previously identified and characterised rice-beneficial bacterial colonisers to design and test a series of associated experiments aimed to identify potential PPB consortia which are able to co-colonise and induce plant growth promotion. Bacterial strains were co-inoculated in vitro and in planta using several different methods and their co-colonisation and co-persistence monitored. Results include the identification of two 5-strain and one 2-strain consortia which displayed plant growth-promoting features. Future practical applications of microbiome research must include experiments aimed at identifying consortia of bacteria which can be most effective as crop amendments.
Research Organization:
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
2471113
Journal Information:
Microbial Biotechnology (Online), Journal Name: Microbial Biotechnology (Online) Journal Issue: 2 Vol. 17; ISSN 1751-7915
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English

References (34)

Inoculation with phosphate-solubilizing microorganisms and a vesicular-arbuscular mycorrhizal fungus improves dry matter yield and nutrient uptake by wheat grown in a sandy soil journal December 1998
Structural relationships among rhizobium meliloti symbiotic promoters journal December 1983
A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application journal September 2019
Reductionist synthetic community approaches in root microbiome research journal June 2019
Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria journal March 2016
Probiotic Pseudomonas communities enhance plant growth and nutrient assimilation via diversity-mediated ecosystem functioning journal October 2017
Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome journal November 2017
Engineering Microbiomes to Improve Plant and Animal Health journal October 2015
A call to arms for cell–cell interactions between bacteria in the plant microbiome journal November 2021
Defining the core Arabidopsis thaliana root microbiome journal August 2012
Microbial diversity drives multifunctionality in terrestrial ecosystems journal January 2016
DADA2: High-resolution sample inference from Illumina amplicon data journal May 2016
The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche journal January 2018
Plant–microbiome interactions: from community assembly to plant health journal August 2020
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 journal July 2019
Sustainable supply chains for supply chain sustainability: impact of sustainability efforts on supply chain risk journal April 2018
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies journal August 2012
Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome journal October 2021
The plant endosphere world – bacterial life within plants journal October 2020
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms journal September 2013
Rice bacterial endophytes: isolation of a collection, identification of beneficial strains and microbiome analysis: Beneficial bacterial endophytes of rice journal May 2016
Plant-Growth-Promoting Rhizobacteria journal October 2009
High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota journal February 2022
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
Microbial interactions within the plant holobiont journal March 2018
Multivariable association discovery in population-scale meta-omics studies journal November 2021
Induction of Drought Tolerance in Cucumber Plants by a Consortium of Three Plant Growth-Promoting Rhizobacterium Strains journal December 2012
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal April 2013
Engineering Host Microbiome for Crop Improvement and Sustainable Agriculture journal May 2021
Effectiveness of Plant Beneficial Microbes: Overview of the Methodological Approaches for the Assessment of Root Colonization and Persistence journal January 2020
From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency journal August 2020
Microbial Consortia for Effective Biocontrol of Root and Foliar Diseases in Tomato journal November 2021
Plant probiotic bacteria: solutions to feed the world journal January 2017
Effect of Plant Growth-Promoting Rhizobacteria at Various Nitrogen Rates on Corn Growth journal January 2019

Similar Records

Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells
Journal Article · Wed Sep 11 20:00:00 EDT 2019 · FEMS Microbiology Ecology · OSTI ID:1570509

Competition among rhizobium species for nodulation of Leucaena leucocephala in two tropical soils
Journal Article · Sun Jul 01 00:00:00 EDT 1984 · Appl. Environ. Microbiol.; (United States) · OSTI ID:5750278

Success Through Synergy (STS): Increasing Cultivation Yield and Stability with Rationally Designed Consortia
Technical Report · Fri Sep 23 00:00:00 EDT 2022 · OSTI ID:1924073

Related Subjects