Laboratory time series moisture manipulative experiment from sediment across the contiguous US: time series aerobic respiration and geochemistry
- Pacific Northwest National Laboratory
- University of Arizona
- University of Arizona/Pacific Northwest National Laboratory
This dataset supports a broader study examining the effects of wetting and drying on hyporheic zone respiration across the contiguous United States (CONUS). The dataset provides data generated from a laboratory moisture manipulation experiment. The contents include time series aerobic respiration and moisture; dissolved oxygen; sediment geochemistry data; and field metadata (including qualitative information on instream and river corridor characteristics). Samples were collected as part of the WHONDRS CONUS-Scale Model-Sample Study (CM). This study was designed following ICON (integrated, coordinated, open, and networked) principles to facilitate a model-experiment (ModEx) iteration approach, leveraging crowdsourced sampling across the CONUS. The data package associated with the CM study is available at This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) readme; (5) field protocol; and a (6) a subfolder with sediment sample data from the incubation experiment. The sample data subfolder contains (1) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC); (2) total nitrogen (TN); (3) adenosine triphosphate (ATP); (4) percent carbon and nitrogen; (5) effect size; (6) iron (II); (7) gravimetric moisture; (8) respiration rates and raw dissolved oxygen values; (9) specific conductance; (10) pH; (11) temperature; (12) a summary containing median values of each data type for each treatment (wet and dry); (13) methods codes; (14) Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) methods; and (15) a subfolder of 9 Tesla FTICR-MS. This folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml. CORRECTION: Carbon and nitrogen content are reported as percentages. The current column headers "01395_C_percent_per_mg" and "01397_N_percent_per_mg" are incorrect. These should read "01395_C_percent" and "01397_N_percent" and will be corrected in the next version of this data package.
- Research Organization:
- Early Career Research Program: Watershed Perturbation-Response Traits Derived Through Ecological Theory - Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS)
- Sponsoring Organization:
- ESS-DIVE; U.S. DOE > Office of Science > Biological and Environmental Research (BER)
- DOE Contract Number:
- AC02-05CH11231
- OSTI ID:
- 2428003
- Country of Publication:
- United States
- Language:
- English
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Related Subjects
Aerobic respiration rate
Biogeochemistry
Canopy cover
Catchment
DO
DOC
Dissolved organic carbon
EARTH SCIENCE > BIOSPHERE > VEGETATION > MACROPHYTES
EARTH SCIENCE > BIOSPHERE > VEGETATION > VEGETATION COVER
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > GASES > DISSOLVED OXYGEN
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN COMPOUNDS
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > CONDUCTIVITY
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > NITROGEN COMPOUNDS
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > ORGANIC MATTER
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > WATER TEMPERATURE
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > pH
ESS-DIVE CSV File Formatting Guidelines Reporting Format
ESS-DIVE File Level Metadata Reporting Format
ESS-DIVE Sample ID and Metadata Reporting Format
ESS-DIVE Water-Soil-Sediment Chemistry Reporting Format
Effect size
FTICR-MS
Fourier transform ion cyclotron resonance mass spectrometry
Freshwater
Gravimetric moisture
Hydraulic exchange
Hydrobiogeochemical function
Hydrology
Hyporheic zone
ICON
IRES
Intermittent
Intermittent Rivers and Ephemeral Streams
Iron (II)
Macrophyte cover
Manipulative laboratory experiment
Moisture
NPOC
Non-perennial
Non-purgeable organic carbon
Percent total carbon
Percent total nitrogen
River
River corridor
Sediment
Specific conductance
Stream
TN
Temperature
Total nitrogen
VIE
Variably inundated Ecosystem
Vegetation
Watershed
Wetting and drying