KBase Narrative - Metabolic_reconstruction_ETDI_mangrove

Name: KBase Narrative - Metabolic_reconstruction_ETDI_mangrove
Published: Tue Apr 09 00:00:00 EDT 2024

Laux, Marcele; Ciapina, Luciane Prioli; Carvalho, Fabiola Marques; Vasconcelos, Ana Tereza

doi:10.25982/157568.747/2335480

KBase Narrative - Metabolic_reconstruction_ETDI_mangrove

Dataset · Tue Apr 09 00:00:00 EDT 2024

DOI:https://doi.org/10.25982/157568.747/2335480· OSTI ID:2335480

^[1]; Ciapina, Luciane Prioli ^[2]; Carvalho, Fabiola Marques ^[2]; Vasconcelos, Ana Tereza ^[2]

Laboratório Nacional de Computação Científica BR (National Laboratory of Scientific Computation); Oak Ridge National Laboratory
Laboratório Nacional de Computação Científica BR (National Laboratory of Scientific Computation)

Mangroves are complex and dynamic coastal ecosystems under frequent fluctuations in physicochemical conditions related to the tidal regime. The frequent variation in organic matter concentration, nutrients, and oxygen availability, among other factors, drives the microbial community composition, favoring syntrophic populations harboring a rich and diverse, stress-driven metabolism. Mangroves are known for their carbon sequestration capability, and their complex and integrated metabolic activity is essential to global biogeochemical cycling. Here, we present a metabolic reconstruction based on the genomic functional capability and flux profile between sympatric MAGs co-assembled from a tropical restored mangrove.

Research Organization:: U.S. Department of Energy Systems Biology Knowledgebase

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI ID:: 2335480

Country of Publication:: United States

Language:: English

References (7)

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Efficiently gap-filling reaction networks Latendresse, Mario BMC Bioinformatics, Vol. 15, Issue 1 https://doi.org/10.1186/1471-2105-15-225	journal	June 2014
High-throughput generation, optimization and analysis of genome-scale metabolic models Henry, Christopher S.; DeJongh, Matthew; Best, Aaron A. Nature Biotechnology, Vol. 28, Issue 9 https://doi.org/10.1038/nbt.1672	journal	August 2010
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P. PLoS ONE, Vol. 5, Issue 3 https://doi.org/10.1371/journal.pone.0009490	journal	March 2010
Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM Dreyfuss, Jonathan M.; Zucker, Jeremy D.; Hood, Heather M. PLoS Computational Biology, Vol. 9, Issue 7 https://doi.org/10.1371/journal.pcbi.1003126	journal	July 2013

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