Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

Seshadri, Rekha; Kyrpides, Nikos C.; Ivanova, Natalia N.

doi:10.1007/s41745-023-00368-7

Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

Journal Article · Wed Jun 21 00:00:00 EDT 2023 · Journal of the Indian Institute of Science (1960)

DOI:https://doi.org/10.1007/s41745-023-00368-7· OSTI ID:2326178

^[1]; Kyrpides, Nikos C. ^[1]; Ivanova, Natalia N. ^[1]

USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

The Integrated Microbial Genomes and Microbiomes (IMG/M) system is a web-based platform that provides access to the wealth of public sequence data arising from diverse environments and enables the user to answer biological questions. In this review, we explore IMG’s tools and features using genome data for genus Deinococcus isolates as well as metagenome-assembled genomes (MAGs). Here, we use various comparative genomic and visualization tools to investigate this genus and address specific research questions.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 2326178

Journal Information:: Journal of the Indian Institute of Science (1960), Journal Name: Journal of the Indian Institute of Science (1960) Journal Issue: 3 Vol. 103; ISSN 0970-4140

Publisher:: Indian Institute of Science - SpringerCopyright Statement

Country of Publication:: United States

Language:: English

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