|
Discovering Knowledge in Data: An Introduction to Data Mining
|
journal
|
June 2014 |
|
Single‐cell sequencing of miRNAs: A modified technology
|
journal
|
May 2020 |
|
Algorithms for hierarchical clustering: an overview
|
journal
|
December 2011 |
|
Single-Cell Analysis of the Transcriptome and Epigenome
|
book
|
January 2022 |
|
BD Rhapsody™ Single-Cell Analysis System Workflow: From Sample to Multimodal Single-Cell Sequencing Data
|
book
|
December 2022 |
|
Cell-Type-Specific Transgenesis in the Mouse
|
book
|
January 2009 |
|
Plant Synthetic Biology: A Paradigm Shift Targeting Stress Mitigation, Reduction of Ecological Footprints and Sustainable Transformation in Agriculture
|
book
|
January 2020 |
|
Harnessing tissue-specific genome editing in plants through CRISPR/Cas system: current state and future prospects
|
journal
|
December 2021 |
|
Diverse roles of PtrDUF579 proteins in Populus and PtrDUF579-1 function in vascular cambium proliferation during secondary growth
|
journal
|
June 2014 |
|
Rapid genotype “independent” Zea mays L. (maize) transformation via direct somatic embryogenesis
|
journal
|
April 2018 |
|
MicroRNA-mediated signaling involved in plant root development
|
journal
|
March 2010 |
|
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
|
journal
|
July 2018 |
|
A cis-regulatory atlas in maize at single-cell resolution
|
journal
|
May 2021 |
|
Innovation, conservation, and repurposing of gene function in root cell type development
|
journal
|
June 2021 |
|
Integrated analysis of multimodal single-cell data
|
journal
|
June 2021 |
|
High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
|
journal
|
May 2019 |
|
Single-cell profiling of Arabidopsis leaves to Pseudomonas syringae infection
|
journal
|
July 2023 |
|
Cell-type-specific responses to fungal infection in plants revealed by single-cell transcriptomics
|
journal
|
October 2023 |
|
Single-cell RNA sequencing reveals the landscape of maize root tips and assists in identification of cell type-specific nitrate-response genes
|
journal
|
December 2022 |
|
Toolboxes for plant systems biology research
|
journal
|
June 2022 |
|
Naught all zeros in sequence count data are the same
|
journal
|
January 2020 |
|
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing
|
journal
|
March 2019 |
|
Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery
|
journal
|
February 2021 |
|
A single-cell analysis of the Arabidopsis vegetative shoot apex
|
journal
|
April 2021 |
|
Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf
|
journal
|
April 2021 |
|
A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
|
journal
|
February 2022 |
|
Single-cell transcriptome atlas of the leaf and root of rice seedlings
|
journal
|
June 2021 |
|
The Technology and Biology of Single-Cell RNA Sequencing
|
journal
|
May 2015 |
|
A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root
|
journal
|
May 2019 |
|
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges
|
journal
|
January 2021 |
|
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level
|
journal
|
March 2021 |
|
PlantscRNAdb: A database for plant single-cell RNA analysis
|
journal
|
June 2021 |
|
Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume
|
journal
|
December 2022 |
|
High-resolution anatomical and spatial transcriptome analyses reveal two types of meristematic cell pools within the secondary vascular tissue of poplar stem
|
journal
|
May 2023 |
|
Parallel accelerated vector similarity calculations for genomics applications
|
journal
|
July 2018 |
|
Epigenetic modifications in plants: an evolutionary perspective
|
journal
|
April 2011 |
|
The promise of single-cell genomics in plants
|
journal
|
April 2020 |
|
Single-cell analysis of cis-regulatory elements
|
journal
|
February 2022 |
|
Analysis of meristems and plant regeneration at single-cell resolution
|
journal
|
August 2023 |
|
Review: Challenges and perspectives in applying single nuclei RNA-seq technology in plant biology
|
journal
|
December 2022 |
|
An optimized FACS-free single-nucleus RNA sequencing (snRNA-seq) method for plant science research
|
journal
|
January 2023 |
|
Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis
|
journal
|
March 2021 |
|
Enabling plant synthetic biology through genome engineering
|
journal
|
February 2015 |
|
Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants
|
journal
|
October 2020 |
|
Plant Single-Cell Multiomics: Cracking the Molecular Profiles of Plant Cells
|
journal
|
June 2021 |
|
Charting plant gene functions in the multi-omics and single-cell era
|
journal
|
March 2023 |
|
Single cell cancer epigenetics
|
journal
|
October 2022 |
|
A Roadmap toward Engineered Nitrogen-Fixing Nodule Symbiosis
|
journal
|
January 2020 |
|
Synthetic biology of plant natural products: From pathway elucidation to engineered biosynthesis in plant cells
|
journal
|
September 2021 |
|
SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data
|
journal
|
August 2018 |
|
Single-cell sequencing of the small-RNA transcriptome
|
journal
|
October 2016 |
|
Massively parallel digital transcriptional profiling of single cells
|
journal
|
January 2017 |
|
SCnorm: robust normalization of single-cell RNA-seq data
|
journal
|
April 2017 |
|
Normalizing single-cell RNA sequencing data: challenges and opportunities
|
journal
|
May 2017 |
|
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
|
journal
|
June 2007 |
|
Single-cell epigenomics: techniques and emerging applications
|
journal
|
October 2015 |
|
Single-cell sequencing techniques from individual to multiomics analyses
|
journal
|
September 2020 |
|
From bulk, single-cell to spatial RNA sequencing
|
journal
|
November 2021 |
|
Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
|
journal
|
November 2018 |
|
Single-cell RNA-seq denoising using a deep count autoencoder
|
journal
|
January 2019 |
|
Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root
|
journal
|
April 2021 |
|
A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data
|
journal
|
May 2022 |
|
An inducible genome editing system for plants
|
journal
|
June 2020 |
|
Single-cell RNA sequencing provides a high-resolution roadmap for understanding the multicellular compartmentation of specialized metabolism
|
journal
|
December 2022 |
|
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
|
journal
|
May 2019 |
|
Visualizing structure and transitions in high-dimensional biological data
|
journal
|
December 2019 |
|
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
|
journal
|
May 2022 |
|
High-throughput total RNA sequencing in single cells using VASA-seq
|
journal
|
June 2022 |
|
Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing
|
journal
|
September 2022 |
|
Microfluidics-free single-cell genomics with templated emulsification
|
journal
|
March 2023 |
|
Deep generative modeling for single-cell transcriptomics
|
journal
|
November 2018 |
|
Data denoising with transfer learning in single-cell transcriptomics
|
journal
|
August 2019 |
|
Exploring single-cell data with deep multitasking neural networks
|
journal
|
October 2019 |
|
Fast, sensitive and accurate integration of single-cell data with Harmony
|
journal
|
November 2019 |
|
From Louvain to Leiden: guaranteeing well-connected communities
|
journal
|
March 2019 |
|
RevGel-seq: instrument-free single-cell RNA sequencing using a reversible hydrogel for cell-specific barcoding
|
journal
|
March 2023 |
|
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
|
journal
|
May 2021 |
|
Plant single-cell solutions for energy and the environment
|
journal
|
August 2021 |
|
scRNA‐seq data analysis method to improve analysis performance
|
journal
|
February 2023 |
|
IBRAP: integrated benchmarking single-cell RNA-sequencing analytical pipeline
|
journal
|
February 2023 |
|
SoCube: an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data
|
journal
|
March 2023 |
|
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder
|
journal
|
April 2023 |
|
Normalization by distributional resampling of high throughput single-cell RNA-sequencing data
|
journal
|
June 2021 |
|
PsiNorm: a scalable normalization for single-cell RNA-seq data
|
journal
|
September 2021 |
|
Con-AAE: contrastive cycle adversarial autoencoders for single-cell multi-omics alignment and integration
|
journal
|
March 2023 |
|
STAR: ultrafast universal RNA-seq aligner
|
journal
|
October 2012 |
|
BBKNN: fast batch alignment of single cell transcriptomes
|
journal
|
August 2019 |
|
Complex Systems Are More than the Sum of Their Parts: Using Integration to Understand Performance, Biomechanics, and Diversity
|
journal
|
May 2015 |
|
PCMDB: a curated and comprehensive resource of plant cell markers
|
journal
|
October 2021 |
|
scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases
|
journal
|
August 2023 |
|
Linnorm: improved statistical analysis for single cell RNA-seq expression data
|
journal
|
September 2017 |
|
Cell-specific CRISPR–Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins
|
journal
|
April 2019 |
|
Single-cell genomics in plants: current state, future directions, and hurdles to overcome
|
journal
|
October 2021 |
|
Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles
|
journal
|
November 2021 |
|
The Plant Cell Atlas: focusing new technologies on the kingdom that nourishes the planet
|
journal
|
December 2021 |
|
Expanding the application of anti-CRISPR proteins in plants for tunable genome editing
|
journal
|
February 2023 |
|
Single-cell transcriptome analyses recapitulate the cellular and developmental responses to abiotic stresses in rice
|
preprint
|
January 2020 |
|
STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data
|
preprint
|
May 2021 |
|
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
|
preprint
|
April 2018 |
|
Defining cell types and states with single-cell genomics
|
journal
|
October 2015 |
|
Plant Systems Biology
|
journal
|
February 2010 |
|
MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants
|
journal
|
December 2015 |
|
Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells
|
journal
|
February 2019 |
|
PscB: A Browser to Explore Plant Single Cell RNA-Sequencing Data Sets
|
journal
|
March 2020 |
|
The Root Hair “Infectome” of Medicago truncatula Uncovers Changes in Cell Cycle Genes and Reveals a Requirement for Auxin Signaling in Rhizobial Infection
|
journal
|
December 2014 |
|
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
|
journal
|
March 2019 |
|
CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis
|
journal
|
September 2019 |
|
Fibre‐specific regulation of lignin biosynthesis improves biomass quality in Populus
|
journal
|
January 2020 |
|
Arabidopsis JMJ17 promotes cotyledon greening during de‐etiolation by repressing genes involved in tetrapyrrole biosynthesis in etiolated seedlings
|
journal
|
May 2021 |
|
A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems
|
journal
|
February 2022 |
|
Plant Single Cell Transcriptome Hub (PsctH): an integrated online tool to explore the plant single‐cell transcriptome landscape
|
journal
|
October 2021 |
|
Single‐cell RNA sequencing profiles of stem‐differentiating xylem in poplar
|
journal
|
December 2021 |
|
Single‐cell RNA‐seq reveals fate determination control of an individual fibre cell initiation in cotton (Gossypium hirsutum)
|
journal
|
October 2022 |
|
An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
|
journal
|
February 2014 |
|
Integrated mass spectrometry imaging and single‐cell transcriptome atlas strategies provide novel insights into taxoid biosynthesis and transport in Taxus mairei stems
|
journal
|
June 2023 |
|
Exploring plant cis‐regulatory elements at single‐cell resolution: overcoming biological and computational challenges to advance plant research
|
journal
|
June 2023 |
|
Spatial transcriptomics drives a new era in plant research
|
journal
|
August 2023 |
|
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
|
journal
|
February 2007 |
|
Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
|
journal
|
March 2018 |
|
Ground tissue circuitry regulates organ complexity in maize and Setaria
|
journal
|
December 2021 |
|
Brassinosteroid gene regulatory networks at cellular resolution in theArabidopsisroot
|
journal
|
March 2023 |
|
NF-κB perturbation reveals unique immunomodulatory functions in Prx1 + fibroblasts that promote development of atopic dermatitis
|
journal
|
February 2022 |
|
Graph Clustering Via a Discrete Uncoupling Process
|
journal
|
January 2008 |
|
Differential expression analysis for sequence count data
|
journal
|
October 2010 |
|
scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
|
journal
|
May 2023 |
|
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
|
journal
|
December 2019 |
|
A systematic evaluation of single-cell RNA-sequencing imputation methods
|
journal
|
August 2020 |
|
Single-cell transcriptomics unveils xylem cell development and evolution
|
journal
|
January 2023 |
|
Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis
|
journal
|
April 2023 |
|
Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem
|
journal
|
August 2023 |
|
Gene length and detection bias in single cell RNA sequencing protocols
|
journal
|
April 2017 |
|
A robust method of nuclei isolation for single-cell RNA sequencing of solid tissues from the plant genus Populus
|
journal
|
May 2021 |
|
Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer
|
journal
|
August 2020 |
|
Current best practices in single‐cell RNA‐seq analysis: a tutorial
|
journal
|
June 2019 |
|
glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling
|
journal
|
January 2017 |
|
SingleCAnalyzer: Interactive Analysis of Single Cell RNA-Seq Data on the Cloud
|
journal
|
May 2022 |
|
A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data
|
journal
|
March 2021 |
|
The female gametophyte: an emerging model for cell type-specific systems biology in plant development
|
journal
|
November 2015 |
|
Single-Cell RNA Sequencing Efficiently Predicts Transcription Factor Targets in Plants
|
journal
|
December 2020 |
|
Single-Cell RNA sequencing of leaf sheath cells reveals the mechanism of rice resistance to brown planthopper (Nilaparvata lugens)
|
journal
|
June 2023 |
|
Revealing the History and Mystery of RNA-Seq
|
journal
|
February 2023 |
|
Technologies for Single-Cell Isolation
|
journal
|
July 2015 |
|
Identification of the Regulators of Epidermis Development under Drought- and Salt-Stressed Conditions by Single-Cell RNA-Seq
|
journal
|
March 2022 |
|
An Efficient and Universal Protoplast Isolation Protocol Suitable for Transient Gene Expression Analysis and Single-Cell RNA Sequencing
|
journal
|
March 2022 |
|
Single-Cell RNA Sequencing for Plant Research: Insights and Possible Benefits
|
journal
|
April 2022 |
|
Recommendations of scRNA-seq Differential Gene Expression Analysis Based on Comprehensive Benchmarking
|
journal
|
June 2022 |
|
Physiological Responses to Drought, Salinity, and Heat Stress in Plants: A Review
|
journal
|
February 2022 |
|
Plant Biosystems Design Research Roadmap 1.0
|
journal
|
December 2020 |
|
Biological and Molecular Components for Genetically Engineering Biosensors in Plants
|
journal
|
January 2022 |
|
Control of plant cell fate transitions by transcriptional and hormonal signals
|
journal
|
October 2017 |
|
Vision, challenges and opportunities for a Plant Cell Atlas
|
journal
|
September 2021 |