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Title: Native sulfur/chlorine SAD phasing for serial femtosecond crystallography

Abstract

Sulfur SAD phasing facilitates the structure determination of diverse native proteins using femtosecond X-rays from free-electron lasers via serial femtosecond crystallography. Serial femtosecond crystallography (SFX) allows structures to be determined with minimal radiation damage. However, phasing native crystals in SFX is not very common. Here, the structure determination of native lysozyme from single-wavelength anomalous diffraction (SAD) by utilizing the anomalous signal of sulfur and chlorine at a wavelength of 1.77 Å is successfully demonstrated. This sulfur SAD method can be applied to a wide range of proteins, which will improve the determination of native crystal structures.

Authors:
 [1];  [2];  [3];  [2];  [4]; ;  [2];  [2];  [4];  [2];  [4];  [5];  [2];  [4]; ;  [2];  [6]; ; ;  [7] more »; ;  [2];  [1];  [2];  [4];  [2] « less
  1. The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan)
  2. RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148 (Japan)
  3. (Korea, Republic of)
  4. (Japan)
  5. Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871 (Japan)
  6. Kyoto University, Yoshidakonoe-cho, Sakyo-ku, Kyoto 606-8501 (Japan)
  7. Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198 (Japan)
Publication Date:
OSTI Identifier:
22515199
Resource Type:
Journal Article
Resource Relation:
Journal Name: Acta Crystallographica. Section D: Biological Crystallography; Journal Volume: 71; Journal Issue: Pt 12; Other Information: PMCID: PMC4667287; PMID: 26627659; PUBLISHER-ID: wa5097; OAI: oai:pubmedcentral.nih.gov:4667287; Copyright (c) Nakane et al. 2015; This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.; Country of input: International Atomic Energy Agency (IAEA)
Country of Publication:
Denmark
Language:
English
Subject:
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; FREE ELECTRON LASERS; RADIATION EFFECTS; SULFUR; X RADIATION

Citation Formats

Nakane, Takanori, Song, Changyong, POSTECH, Pohang 790-784, Suzuki, Mamoru, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Nango, Eriko, Kobayashi, Jun, Masuda, Tetsuya, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Inoue, Shigeyuki, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Mizohata, Eiichi, Nakatsu, Toru, Kyoto University, 46-29 Yoshida Shimoadachi-cho, Sakyo-ku, Kyoto 606-8501, Tanaka, Tomoyuki, Tanaka, Rie, Shimamura, Tatsuro, Tono, Kensuke, Joti, Yasumasa, Kameshima, Takashi, Hatsui, Takaki, Yabashi, Makina, Nureki, Osamu, Iwata, So, Kyoto University, Yoshidakonoe-cho, Sakyo-ku, Kyoto 606-8501, and Sugahara, Michihiro, E-mail: msuga@spring8.or.jp. Native sulfur/chlorine SAD phasing for serial femtosecond crystallography. Denmark: N. p., 2015. Web. doi:10.1107/S139900471501857X.
Nakane, Takanori, Song, Changyong, POSTECH, Pohang 790-784, Suzuki, Mamoru, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Nango, Eriko, Kobayashi, Jun, Masuda, Tetsuya, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Inoue, Shigeyuki, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Mizohata, Eiichi, Nakatsu, Toru, Kyoto University, 46-29 Yoshida Shimoadachi-cho, Sakyo-ku, Kyoto 606-8501, Tanaka, Tomoyuki, Tanaka, Rie, Shimamura, Tatsuro, Tono, Kensuke, Joti, Yasumasa, Kameshima, Takashi, Hatsui, Takaki, Yabashi, Makina, Nureki, Osamu, Iwata, So, Kyoto University, Yoshidakonoe-cho, Sakyo-ku, Kyoto 606-8501, & Sugahara, Michihiro, E-mail: msuga@spring8.or.jp. Native sulfur/chlorine SAD phasing for serial femtosecond crystallography. Denmark. doi:10.1107/S139900471501857X.
Nakane, Takanori, Song, Changyong, POSTECH, Pohang 790-784, Suzuki, Mamoru, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Nango, Eriko, Kobayashi, Jun, Masuda, Tetsuya, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Inoue, Shigeyuki, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Mizohata, Eiichi, Nakatsu, Toru, Kyoto University, 46-29 Yoshida Shimoadachi-cho, Sakyo-ku, Kyoto 606-8501, Tanaka, Tomoyuki, Tanaka, Rie, Shimamura, Tatsuro, Tono, Kensuke, Joti, Yasumasa, Kameshima, Takashi, Hatsui, Takaki, Yabashi, Makina, Nureki, Osamu, Iwata, So, Kyoto University, Yoshidakonoe-cho, Sakyo-ku, Kyoto 606-8501, and Sugahara, Michihiro, E-mail: msuga@spring8.or.jp. 2015. "Native sulfur/chlorine SAD phasing for serial femtosecond crystallography". Denmark. doi:10.1107/S139900471501857X.
@article{osti_22515199,
title = {Native sulfur/chlorine SAD phasing for serial femtosecond crystallography},
author = {Nakane, Takanori and Song, Changyong and POSTECH, Pohang 790-784 and Suzuki, Mamoru and Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871 and Nango, Eriko and Kobayashi, Jun and Masuda, Tetsuya and Kyoto University, Gokasho, Uji, Kyoto 611-0011 and Inoue, Shigeyuki and The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 and Mizohata, Eiichi and Nakatsu, Toru and Kyoto University, 46-29 Yoshida Shimoadachi-cho, Sakyo-ku, Kyoto 606-8501 and Tanaka, Tomoyuki and Tanaka, Rie and Shimamura, Tatsuro and Tono, Kensuke and Joti, Yasumasa and Kameshima, Takashi and Hatsui, Takaki and Yabashi, Makina and Nureki, Osamu and Iwata, So and Kyoto University, Yoshidakonoe-cho, Sakyo-ku, Kyoto 606-8501 and Sugahara, Michihiro, E-mail: msuga@spring8.or.jp},
abstractNote = {Sulfur SAD phasing facilitates the structure determination of diverse native proteins using femtosecond X-rays from free-electron lasers via serial femtosecond crystallography. Serial femtosecond crystallography (SFX) allows structures to be determined with minimal radiation damage. However, phasing native crystals in SFX is not very common. Here, the structure determination of native lysozyme from single-wavelength anomalous diffraction (SAD) by utilizing the anomalous signal of sulfur and chlorine at a wavelength of 1.77 Å is successfully demonstrated. This sulfur SAD method can be applied to a wide range of proteins, which will improve the determination of native crystal structures.},
doi = {10.1107/S139900471501857X},
journal = {Acta Crystallographica. Section D: Biological Crystallography},
number = Pt 12,
volume = 71,
place = {Denmark},
year = 2015,
month =
}