Deposit3D: a tool for automating structure depositions to the Protein Data Bank
- SGX Inc., 10505 Roselle Street, San Diego, CA 92121 (United States)
This paper describes a Python script that may be used to gather all required structure-annotation information into an mmCIF file for upload through the RCSB PDB ADIT structure-deposition interface. Almost all successful protein structure-determination projects in the public sector culminate in a structure deposition to the Protein Data Bank (PDB). In order to expedite the deposition proces, Deposit3D has been developed. This command-line script calculates or gathers all the required structure-deposition information and outputs this data into a mmCIF file for subsequent upload through the RCSB PDB ADIT interface. Deposit3D might be particularly useful for structural genomics pipeline projects because it allows workers involved with various stages of a structure-determination project to pool their different categories of annotation information before starting a deposition session.
- OSTI ID:
- 22356163
- Journal Information:
- Acta Crystallographica. Section F, Vol. 61, Issue Pt 9; Other Information: PMCID: PMC1978113; PMID: 16511167; PUBLISHER-ID: hi5569; OAI: oai:pubmedcentral.nih.gov:1978113; Copyright (c) International Union of Crystallography 2005; Country of input: International Atomic Energy Agency (IAEA); ISSN 1744-3091
- Country of Publication:
- United Kingdom
- Language:
- English
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