Tribute to José N. Onuchic

Morcos, Faruck; Whitford, Paul C.; Cheung, Margaret S.

doi:10.1021/acs.jpcb.3c05234

Tribute to José N. Onuchic

Journal Article · Thu Sep 07 00:00:00 EDT 2023 · Journal of Physical Chemistry. B

DOI:https://doi.org/10.1021/acs.jpcb.3c05234· OSTI ID:2229887

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University of Texas at Dallas, Richardson, TX (United States)
Northeastern University, Boston, MA (United States)
Pacific Northwest National Laboratory (PNNL), Seattle, WA (United States); University of Washington, Seattle, WA (United States)

This Festschrift Virtual Special Issue in The Journal of Physical Chemistry B is dedicated to the scientific contributions of Prof. José Nelson Onuchic. It serves as a celebration of his years of service, mentorship, and leadership to the biological physics, theoretical chemistry, and computational biology communities. This collection of more than 60 articles has been compiled from an extensive network of scientists that have, in distinct ways, been impacted by the scientific legacy of Prof. Onuchic. It is a written testament to how his work has influenced many areas related to the physics and chemistry of biological systems. In conclusion, this Festschrift provides a good sample of the areas in that Professor Onuchic has had a direct impact via collaboration, mentorship, and scientific dissemination of his research.

View Accepted Manuscript (DOE)

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 2229887

Report Number(s):: PNNL-SA--187676

Journal Information:: Journal of Physical Chemistry. B, Journal Name: Journal of Physical Chemistry. B Journal Issue: 35 Vol. 127; ISSN 1520-6106

Publisher:: American Chemical SocietyCopyright Statement

Country of Publication:: United States

Language:: English

References (15)

Funnels, pathways, and the energy landscape of protein folding: A synthesis Bryngelson, Joseph D.; Onuchic, José Nelson; Socci, Nicholas D. Proteins: Structure, Function, and Genetics, Vol. 21, Issue 3 https://doi.org/10.1002/prot.340210302	journal	March 1995
Theory of protein folding Onuchic, José Nelson; Wolynes, Peter G. Current Opinion in Structural Biology, Vol. 14, Issue 1 https://doi.org/10.1016/j.sbi.2004.01.009	journal	February 2004
Mapping electron tunneling pathways: an algorithm that finds the "minimum length"/maximum coupling pathway between electron donors and acceptors in proteins Betts, Jonathan N.; Beratan, David N.; Onuchic, Jose Nelson Journal of the American Chemical Society, Vol. 114, Issue 11 https://doi.org/10.1021/ja00037a004	journal	May 1992
Decoding leader cells in collective cancer invasion Vilchez Mercedes, Samuel A.; Bocci, Federico; Levine, Herbert Nature Reviews Cancer, Vol. 21, Issue 9 https://doi.org/10.1038/s41568-021-00376-8	journal	July 2021
Effect of friction on electron transfer in biomolecules Garg, Anupam; Onuchic, José Nelson; Ambegaokar, Vinay The Journal of Chemical Physics, Vol. 83, Issue 9 https://doi.org/10.1063/1.449017	journal	November 1985
Internal strain regulates the nucleotide binding site of the kinesin leading head Hyeon, Changbong; Onuchic, José N. Proceedings of the National Academy of Sciences, Vol. 104, Issue 7 https://doi.org/10.1073/pnas.0610939104	journal	February 2007
Direct-coupling analysis of residue coevolution captures native contacts across many protein families Morcos, F.; Pagnani, A.; Lunt, B. Proceedings of the National Academy of Sciences, Vol. 108, Issue 49 https://doi.org/10.1073/pnas.1111471108	journal	November 2011
MicroRNA-based regulation of epithelial-hybrid-mesenchymal fate determination Lu, M.; Jolly, M. K.; Levine, H. Proceedings of the National Academy of Sciences, Vol. 110, Issue 45 https://doi.org/10.1073/pnas.1318192110	journal	October 2013
Transferable model for chromosome architecture Di Pierro, Michele; Zhang, Bin; Aiden, Erez Lieberman Proceedings of the National Academy of Sciences, Vol. 113, Issue 43 https://doi.org/10.1073/pnas.1613607113	journal	September 2016
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture Di Pierro, Michele; Cheng, Ryan R.; Lieberman Aiden, Erez Proceedings of the National Academy of Sciences, Vol. 114, Issue 46 https://doi.org/10.1073/pnas.1714980114	journal	October 2017
Toward understanding cancer stem cell heterogeneity in the tumor microenvironment Bocci, Federico; Gearhart-Serna, Larisa; Boareto, Marcelo Proceedings of the National Academy of Sciences, Vol. 116, Issue 1 https://doi.org/10.1073/pnas.1815345116	journal	December 2018
Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain Staquicini, Daniela I.; Tang, Fenny H. F.; Markosian, Christopher Proceedings of the National Academy of Sciences, Vol. 118, Issue 30 https://doi.org/10.1073/pnas.2105739118	journal	July 2021
Protein folding funnels: a kinetic approach to the sequence-structure relationship. Leopold, P. E.; Montal, M.; Onuchic, J. N. Proceedings of the National Academy of Sciences, Vol. 89, Issue 18 https://doi.org/10.1073/pnas.89.18.8721	journal	September 1992
Pathway Analysis of Protein Electron-Transfer Reactions Onuchic, J. N.; Beratan, D. N.; Winkler, J. R. Annual Review of Biophysics and Biomolecular Structure, Vol. 21, Issue 1 https://doi.org/10.1146/annurev.bb.21.060192.002025	journal	June 1992
THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective Onuchic, José Nelson; Luthey-Schulten, Zaida; Wolynes, Peter G. Annual Review of Physical Chemistry, Vol. 48, Issue 1 https://doi.org/10.1146/annurev.physchem.48.1.545	journal	October 1997

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