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Structure of the Wnt–Frizzled–LRP6 initiation complex reveals the basis for coreceptor discrimination

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
Wnt morphogens are critical for embryonic development and tissue regeneration. Canonical Wnts form ternary receptor complexes composed of tissue-specific Frizzled (Fzd) receptors together with the shared LRP5/6 coreceptors to initiate β-catenin signaling. The cryo-EM structure of a ternary initiation complex of an affinity-matured XWnt8–Frizzled8–LRP6 complex elucidates the basis of coreceptor discrimination by canonical Wnts by means of their N termini and linker domains that engage the LRP6 E1E2 domain funnels. Chimeric Wnts bearing modular linker “grafts” were able to transfer LRP6 domain specificity between different Wnts and enable non-canonical Wnt5a to signal through the canonical pathway. Synthetic peptides comprising the linker domain serve as Wnt-specific antagonists. The structure of the ternary complex provides a topological blueprint for the orientation and proximity of Frizzled and LRP6 within the Wnt cell surface signalosome.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Advanced Light Source (ALS); SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
Sponsoring Organization:
National Institute of General Medical Sciences (NIGMS); National Institutes of Health (NIH); USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC02-76SF00515
OSTI ID:
2003210
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Issue: 11 Vol. 120; ISSN 0027-8424
Publisher:
National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English

References (65)

UCSF ChimeraX: Meeting modern challenges in visualization and analysis: UCSF ChimeraX Visualization System journal September 2017
Selective isolation of transiently transfected cells from a mammalian cell population with vectors expressing a membrane anchored single-chain antibody journal June 1996
Peptide ‘Velcro’: Design of a heterodimeric coiled coil journal October 1993
Vascular Development in the Retina and Inner Ear journal March 2004
Functional and structural diversity of the human Dickkopf gene family journal October 1999
Tiki1 Is Required for Head Formation via Wnt Cleavage-Oxidation and Inactivation journal June 2012
Wnt/β-Catenin Signaling and Disease journal June 2012
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities journal June 2017
Facile discovery of surrogate cytokine agonists journal April 2022
Conformational Freedom of the LRP6 Ectodomain Is Regulated by N-glycosylation and the Binding of the Wnt Antagonist Dkk1 journal January 2017
Development of Potent, Selective Surrogate WNT Molecules and Their Application in Defining Frizzled Requirements journal May 2020
Wnt/β-Catenin Signaling: Components, Mechanisms, and Diseases journal July 2009
Structural Architecture and Functional Evolution of Wnts journal August 2012
Inference of Macromolecular Assemblies from Crystalline State journal September 2007
Automated electron microscope tomography using robust prediction of specimen movements journal October 2005
Next-Generation Surrogate Wnts Support Organoid Growth and Deconvolute Frizzled Pleiotropy In Vivo journal November 2020
Wnt Antagonists Bind through a Short Peptide to the First β-Propeller Domain of LRP5/6 journal October 2011
Structural Studies of Wnts and Identification of an LRP6 Binding Site journal July 2013
LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery journal October 2011
Dickkopf-1 is a member of a new family of secreted proteins and functions in head induction journal January 1998
Lentiviral gene ontology (LeGO) vectors equipped with novel drug-selectable fluorescent proteins: new building blocks for cell marking and multi-gene analysis journal December 2009
Surrogate Wnt agonists that phenocopy canonical Wnt and β-catenin signalling journal May 2017
Inhibition of Wnt signaling by Dishevelled PDZ peptides journal March 2009
Fatty acylation of Wnt proteins journal January 2016
Allosteric peptides bind a caspase zymogen and mediate caspase tetramerization journal June 2012
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination journal February 2017
Addressing preferred specimen orientation in single-particle cryo-EM through tilting journal July 2017
WNT signalling pathways as therapeutic targets in cancer journal December 2012
Crystal structures of the extracellular domain of LRP6 and its complex with DKK1 journal October 2011
Anti-LRP5/6 VHHs promote differentiation of Wnt-hypersensitive intestinal stem cells journal January 2019
Sclerostin inhibits Wnt signaling through tandem interaction with two LRP6 ectodomains journal October 2020
Crystal structure of the Frizzled 4 receptor in a ligand-free state journal August 2018
Highly accurate protein structure prediction with AlphaFold journal July 2021
Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs journal October 2019
Crystal structure of a mammalian Wnt–frizzled complex journal April 2019
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing journal July 2021
Directed evolution identifies high-affinity cystine-knot peptide agonists and antagonists of Wnt/β-catenin signaling journal November 2022
Reconstitution of a Frizzled8·Wnt3a·LRP6 Signaling Complex Reveals Multiple Wnt and Dkk1 Binding Sites on LRP6 journal January 2010
Characterization of Tiki, a New Family of Wnt-specific Metalloproteases journal December 2015
LRP5 Mutations Linked to High Bone Mass Diseases Cause Reduced LRP5 Binding and Inhibition by SOST journal October 2006
Osteocyte control of bone formation via sclerostin, a novel BMP antagonist journal December 2003
A series of PDB related databases for everyday needs journal November 2010
Frizzled and LRP5/6 Receptors for Wnt/ -Catenin Signaling journal December 2012
Canonical and noncanonical Wnts use a common mechanism to activate completely unrelated coreceptors journal November 2010
Phaser crystallographic software journal July 2007
Coot model-building tools for molecular graphics journal November 2004
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion journal March 2006
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
How good are my data and what is the resolution? journal June 2013
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix journal October 2019
Structural Basis of Wnt Recognition by Frizzled journal May 2012
An integral program for tissue renewal and regeneration: Wnt signaling and stem cell control journal October 2014
Topological control of cytokine receptor signaling induces differential effects in hematopoiesis journal May 2019
Reduced Affinity to and Inhibition by DKK1 Form a Common Mechanism by Which High Bone Mass-Associated Missense Mutations in LRP5 Affect Canonical Wnt Signaling journal May 2005
The Wnt Pathway: From Signaling Mechanisms to Synthetic Modulators journal June 2022
High Bone Mass in Mice Expressing a Mutant LRP5 Gene journal June 2003
Wnt Isoform-Specific Interactions with Coreceptor Specify Inhibition or Potentiation of Signaling by LRP6 Antibodies journal September 2010
Rapid and robust antibody Fab fragment crystallization utilizing edge-to-edge beta-sheet packing journal September 2020
LRP5 and LRP6 in Wnt Signaling: Similarity and Divergence journal May 2021
The Genetic Architecture of High Bone Mass journal October 2020
Collaboration gets the most out of software journal September 2013
Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan journal July 2015
Tailored tetravalent antibodies potently and specifically activate Wnt/Frizzled pathways in cells, organoids and mice journal August 2019
Molecular determinants in Frizzled, Reck, and Wnt7a for ligand-specific signaling in neurovascular development journal June 2019
Structure of human Frizzled5 by fiducial-assisted cryo-EM supports a heterodimeric mechanism of canonical Wnt signaling journal August 2020