GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
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journal
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March 2018 |
Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale
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September 2017 |
Microbial community associated with ectomycorrhizal Russula symbiosis and dominated nature areas in southern China
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March 2021 |
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
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January 2019 |
Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays
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October 2021 |
Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly
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August 2021 |
Root Morphology, Stem Growth and Field Performance of Seedlings of Two Mediterranean Evergreen Oak Species Raised in Different Container Types
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December 2005 |
SigB regulates stress resistance, glucose starvation, MnSOD production, biofilm formation, and root colonization in Bacillus cereus 905
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August 2021 |
Iron tolerance in rice: an efficient method for performing quick early genotype screening
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June 2019 |
Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect
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February 2013 |
Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions
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March 2021 |
Improved metagenome binning and assembly using deep variational autoencoders
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January 2021 |
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
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April 2021 |
An assessment of the genomics, comparative genomics and cellulose degradation potential of Mucilaginibacter polytrichastri strain RG4-7
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February 2020 |
EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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June 2019 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |
Differential characterization of physiological and biochemical responses during drought stress in finger millet varieties
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May 2019 |
Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat
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October 2016 |
Effect of container type and seedling size on survival and early height growth of Pinus palustris seedlings in Alabama, U.S.A.
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January 2005 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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March 2010 |
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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January 2015 |
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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October 2015 |
Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)
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February 2021 |
Paenibacillus rhizophilus sp. nov., a nitrogen-fixing bacterium isolated from the rhizosphere of wheat (Triticum aestivum L.)
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December 2019 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
Actinobacterial community dominated by a distinct clade in acidic soil of a waterlogged deciduous forest
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August 2011 |
Genomic and phenotypic insights into the ecology of Arthrobacter from Antarctic soils
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February 2015 |
Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
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October 2019 |
The structure and function of the global citrus rhizosphere microbiome
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November 2018 |
Metabolic responses of wheat seedlings to osmotic stress induced by various osmolytes under iso-osmotic conditions
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December 2019 |
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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May 2018 |
The shoot and root growth of Brachypodium and its potential as a model for wheat and other cereal crops
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January 2009 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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April 2012 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
Error filtering, pair assembly and error correction for next-generation sequencing reads
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July 2015 |
Variation in genomic traits of microbial communities among ecosystems
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December 2021 |
Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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May 2019 |
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
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November 2019 |
Binning metagenomic contigs by coverage and composition
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September 2014 |
A Re-Examination of the Relative Turgidity Technique for Estimating Water Deficits in Leaves
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January 1962 |
Root type is not an important driver of mycorrhizal colonisation in Brachypodium distachyon
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November 2017 |
Discovery of a haem uptake system in the soil bacterium Bradyrhizobium japonicum
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January 2002 |
Soil microbial community composition in tallgrass prairie restorations converge with remnants across a 27‐year chronosequence
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July 2017 |
Evolution of bacterial communities in the wheat crop rhizosphere: Rhizosphere bacteria in field-grown intensive wheat crops
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May 2014 |
BLAST+: architecture and applications
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journal
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January 2009 |
Effects of fertilization and container-type on nutrient uptake and utilization by four subtropical tree seedlings
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November 2019 |
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
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July 2017 |
Ultra-accurate microbial amplicon sequencing with synthetic long reads
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June 2021 |
Nursery Practices Influence Seedling Morphology, Field Performance, and Cost Efficiency of Containerized Cherrybark Oak
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journal
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August 2004 |
Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R
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January 2016 |
The adaptation mechanisms of Acidithiobacillus caldus CCTCC M 2018054 to extreme acid stress: Bioleaching performance, physiology, and transcriptomics
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August 2021 |
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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November 2019 |
Hotspots of root-exuded amino acids are created within a rhizosphere-on-a-chip
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January 2022 |
Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?: Root exudates and rhizosphere bacteria
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March 2010 |
Accelerated Growth Rate and Increased Drought Stress Resilience of the Model Grass Brachypodium distachyon Colonized by Bacillus subtilis B26
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June 2015 |
FtsEX-CwlO regulates biofilm formation by a plant-beneficial rhizobacterium Bacillus velezensis SQR9
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April 2018 |
ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences
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June 2017 |
Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition
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April 2015 |
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
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June 2016 |
Diazotroph Paenibacillus triticisoli BJ-18 Drives the Variation in Bacterial, Diazotrophic and Fungal Communities in the Rhizosphere and Root/Shoot Endosphere of Maize
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February 2021 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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December 2014 |
Structure and Functions of the Bacterial Microbiota of Plants
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April 2013 |