Molecular determinants for differential activation of the bile acid receptor from the pathogen Vibrio parahaemolyticus

Zou, Angela J.; Kinch, Lisa; Chimalapati, Suneeta; Garcia, Nalleli; Tomchick, Diana R.; Orth, Kim

doi:10.1016/j.jbc.2023.104591

Title: Molecular determinants for differential activation of the bile acid receptor from the pathogen Vibrio parahaemolyticus

Journal Article · Sat Apr 01 00:00:00 EDT 2023 · Journal of Biological Chemistry

DOI:https://doi.org/10.1016/j.jbc.2023.104591· OSTI ID:1970043

; Kinch, Lisa; Chimalapati, Suneeta; Garcia, Nalleli; Tomchick, Diana R.;

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Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1970043

Journal Information:: Journal of Biological Chemistry, Journal Name: Journal of Biological Chemistry Vol. 299 Journal Issue: 4; ISSN 0021-9258

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

References (31)

Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design Chodera, John D.; Mobley, David L. Annual Review of Biophysics, Vol. 42, Issue 1 https://doi.org/10.1146/annurev-biophys-083012-130318	journal	May 2013
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of p K _a Values Søndergaard, Chresten R.; Olsson, Mats H. M.; Rostkowski, Michał Journal of Chemical Theory and Computation, Vol. 7, Issue 7 https://doi.org/10.1021/ct200133y	journal	June 2011
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical p K _a Predictions Olsson, Mats H. M.; Søndergaard, Chresten R.; Rostkowski, Michal Journal of Chemical Theory and Computation, Vol. 7, Issue 2 https://doi.org/10.1021/ct100578z	journal	December 2010
Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator Schlundt, Andreas; Buchner, Sophie; Janowski, Robert Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-01031-9	journal	April 2017
Bile salt receptor complex activates a pathogenic type III secretion system Li, Peng; Rivera-Cancel, Giomar; Kinch, Lisa N. eLife, Vol. 5 https://doi.org/10.7554/eLife.15718	journal	July 2016
Very fast empirical prediction and rationalization of protein pKa values Li, Hui; Robertson, Andrew D.; Jensen, Jan H. Proteins: Structure, Function, and Bioinformatics, Vol. 61, Issue 4 https://doi.org/10.1002/prot.20660	journal	October 2005
Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection Alavi, Salma; Mitchell, Jonathan D.; Cho, Jennifer Y. Cell, Vol. 181, Issue 7 https://doi.org/10.1016/j.cell.2020.05.036	journal	June 2020
HKL -3000: the integration of data reduction and structure solution – from diffraction images to an initial model in minutes Minor, Wladek; Cymborowski, Marcin; Otwinowski, Zbyszek Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 8 https://doi.org/10.1107/S0907444906019949	journal	July 2006
Bile Acid-Induced Virulence Gene Expression of Vibrio parahaemolyticus Reveals a Novel Therapeutic Potential for Bile Acid Sequestrants Gotoh, Kazuyoshi; Kodama, Toshio; Hiyoshi, Hirotaka PLoS ONE, Vol. 5, Issue 10 https://doi.org/10.1371/journal.pone.0013365	journal	October 2010
Integration and global analysis of isothermal titration calorimetry data for studying macromolecular interactions Brautigam, Chad A.; Zhao, Huaying; Vargas, Carolyn Nature Protocols, Vol. 11, Issue 5 https://doi.org/10.1038/nprot.2016.044	journal	April 2016
MolProbity : all-atom structure validation for macromolecular crystallography Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1 https://doi.org/10.1107/S0907444909042073	journal	December 2009
The interaction between bacteria and bile Begley, Máire; Gahan, Cormac G. M.; Hill, Colin FEMS Microbiology Reviews, Vol. 29, Issue 4 https://doi.org/10.1016/j.femsre.2004.09.003	journal	September 2005
A family of promoter probe vectors incorporating autofluorescent and chromogenic reporter proteins for studying gene expression in Gram-negative bacteria Karunakaran, R.; Mauchline, T. H.; Hosie, A. H. F. Microbiology, Vol. 151, Issue 10 https://doi.org/10.1099/mic.0.28311-0	journal	October 2005
Vibrio parahaemolyticus VtrA is a membrane-bound regulator and is activated via oligomerization Okada, Ryu; Matsuda, Shigeaki; Iida, Tetsuya PLOS ONE, Vol. 12, Issue 11 https://doi.org/10.1371/journal.pone.0187846	journal	November 2017
Features and development of Coot Emsley, P.; Lohkamp, B.; Scott, W. G. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4 https://doi.org/10.1107/S0907444910007493	journal	March 2010
Co-component signal transduction systems: Fast-evolving virulence regulation cassettes discovered in enteric bacteria Kinch, Lisa N.; Cong, Qian; Jaishankar, Jananee Proceedings of the National Academy of Sciences, Vol. 119, Issue 24 https://doi.org/10.1073/pnas.2203176119	journal	June 2022
Vibrio parahaemolyticus : Basic Techniques for Growth, Genetic Manipulation, and Analysis of Virulence Factors Chimalapati, Suneeta; Lafrance, Alexander E.; Chen, Luming Current Protocols in Microbiology, Vol. 59, Issue 1 https://doi.org/10.1002/cpmc.131	journal	December 2020
Calculations and Publication-Quality Illustrations for Analytical Ultracentrifugation Data Brautigam, Chad A. Methods in Enzymology https://doi.org/10.1016/bs.mie.2015.05.001	book	January 2015
High-Precision Isothermal Titration Calorimetry with Automated Peak-Shape Analysis Keller, Sandro; Vargas, Carolyn; Zhao, Huaying Analytical Chemistry, Vol. 84, Issue 11 https://doi.org/10.1021/ac3007522	journal	June 2012
Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract Foley, Matthew H.; O’Flaherty, Sarah; Barrangou, Rodolphe PLOS Pathogens, Vol. 15, Issue 3 https://doi.org/10.1371/journal.ppat.1007581	journal	March 2019
Type III Effector VopC Mediates Invasion for Vibrio Species Zhang, Lingling; Krachler, Anne Marie; Broberg, Christopher A. Cell Reports, Vol. 1, Issue 5 https://doi.org/10.1016/j.celrep.2012.04.004	journal	May 2012
Measurement of gastrointestinal pH profiles in normal ambulant human subjects. Evans, D. F.; Pye, G.; Bramley, R. Gut, Vol. 29, Issue 8 https://doi.org/10.1136/gut.29.8.1035	journal	August 1988
Inference of Macromolecular Assemblies from Crystalline State Krissinel, Evgeny; Henrick, Kim Journal of Molecular Biology, Vol. 372, Issue 3 https://doi.org/10.1016/j.jmb.2007.05.022	journal	September 2007
Joint X-ray and neutron refinement with phenix.refine Afonine, Pavel V.; Mustyakimov, Marat; Grosse-Kunstleve, Ralf W. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 11 https://doi.org/10.1107/S0907444910026582	journal	October 2010
DaliLite workbench for protein structure comparison Holm, L.; Park, J. Bioinformatics, Vol. 16, Issue 6 https://doi.org/10.1093/bioinformatics/16.6.566	journal	June 2000
Two Regulators of Vibrio parahaemolyticus Play Important Roles in Enterotoxicity by Controlling the Expression of Genes in the Vp-PAI Region Kodama, Toshio; Gotoh, Kazuyoshi; Hiyoshi, Hirotaka PLoS ONE, Vol. 5, Issue 1 https://doi.org/10.1371/journal.pone.0008678	journal	January 2010
Intracellular Vibrio parahaemolyticus Escapes the Vacuole and Establishes a Replicative Niche in the Cytosol of Epithelial Cells de Souza Santos, Marcela; Orth, Kim mBio, Vol. 5, Issue 5 https://doi.org/10.1128/mBio.01506-14	journal	October 2014
The Continuing Importance of Bile Acids in Liver and Intestinal Disease Hofmann, Alan F. Archives of Internal Medicine, Vol. 159, Issue 22 https://doi.org/10.1001/archinte.159.22.2647	journal	December 1999
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Structural insights into the signalling mechanisms of two-component systems Jacob-Dubuisson, Françoise; Mechaly, Ariel; Betton, Jean-Michel Nature Reviews Microbiology, Vol. 16, Issue 10 https://doi.org/10.1038/s41579-018-0055-7	journal	July 2018
High-precision, automated integration of multiple isothermal titration calorimetric thermograms: New features of NITPIC Scheuermann, Thomas H.; Brautigam, Chad A. Methods, Vol. 76 https://doi.org/10.1016/j.ymeth.2014.11.024	journal	April 2015

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