The physical structure of soil: Determinant and consequence of trophic interactions
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journal
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September 2020 |
Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing
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March 2019 |
Partitioning sources of CO2 emission after soil wetting using high-resolution observations and minimal models
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April 2020 |
A meta-analysis of temperature sensitivity as a microbial trait
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July 2018 |
Multiple models and experiments underscore large uncertainty in soil carbon dynamics
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October 2018 |
A soil microbial model to analyze decoupled microbial growth and respiration during soil drying and rewetting
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September 2020 |
Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil
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May 2014 |
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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March 2018 |
Fungal interactions reduce carbon use efficiency
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July 2017 |
Microbial contribution to SOM quantity and quality in density fractions of temperate arable soils
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February 2015 |
Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward
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May 2019 |
Predatory Myxococcales are widely distributed in and closely correlated with the bacterial community structure of agricultural land
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February 2020 |
Microbiomes in light of traits: A phylogenetic perspective
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November 2015 |
Uncertainty quantification of the soil moisture response functions for microbial dormancy and resuscitation
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September 2021 |
Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere
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June 2008 |
Microbial extracellular polysaccharide production and aggregate stability controlled by switchgrass (Panicum virgatum) root biomass and soil water potential
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April 2020 |
The ‘Neglected’ Soil Virome – Potential Role and Impact
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August 2018 |
Active virus-host interactions at sub-freezing temperatures in Arctic peat soil
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October 2021 |
Hyphae move matter and microbes to mineral microsites: Integrating the hyphosphere into conceptual models of soil organic matter stabilization
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January 2022 |
Embracing the unknown: disentangling the complexities of the soil microbiome
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August 2017 |
Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil
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March 2020 |
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe
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August 2015 |
Microbial cell-envelope fragments and the formation of soil organic matter: a case study from a glacier forefield
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September 2012 |
Microbial diversity drives carbon use efficiency in a model soil
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July 2020 |
Microbial growth dynamics on the basis of individual budgets
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January 1991 |
Synergistic effects of diffusion and microbial physiology reproduce the Birch effect in a micro-scale model
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February 2016 |
Global biogeography of fungal and bacterial biomass carbon in topsoil
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December 2020 |
A trait-based approach for modelling microbial litter decomposition
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May 2012 |
Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
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March 2015 |
Persistence of soil organic carbon caused by functional complexity
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July 2020 |
Microbial dispersal in unsaturated porous media: Characteristics of motile bacterial cell motions in unsaturated angular pore networks
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September 2014 |
Equifinality, sloppiness, and emergent structures of mechanistic soil biogeochemical models
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December 2019 |
The decomposition of ectomycorrhizal fungal necromass
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February 2016 |
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
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July 2016 |
Particulate organic matter as a functional soil component for persistent soil organic carbon
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July 2021 |
Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions
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November 2014 |
Integrating Viral Metagenomics into an Ecological Framework
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September 2021 |
Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage
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January 2014 |
Microbial dormancy and its impacts on northern temperate and boreal terrestrial ecosystem carbon budget
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January 2020 |
Mycorrhizal Fungi as Mediators of Soil Organic Matter Dynamics
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November 2019 |
Tracking, targeting, and conserving soil biodiversity
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January 2021 |
Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests
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December 2014 |
Sensitivity of decomposition rates of soil organic matter with respect to simultaneous changes in temperature and moisture
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February 2015 |
Dilution reveals how viral lysis and grazing shape microbial communities: Viral Lysis and Grazing Shape Microbial Communities
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February 2016 |
The importance of anabolism in microbial control over soil carbon storage
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July 2017 |
Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities
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July 2021 |
Impact of wheat straw decomposition on successional patterns of soil microbial community structure
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February 2009 |
The Evolution and Ecology of Bacterial Warfare
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June 2019 |
Rapid and transient response of soil respiration to rain
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June 2004 |
The elemental composition of virus particles: implications for marine biogeochemical cycles
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June 2014 |
A general mathematical framework for representing soil organic matter dynamics
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November 2015 |
Environmental stress response limits microbial necromass contributions to soil organic carbon
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June 2015 |
Mineralogy dictates the initial mechanism of microbial necromass association
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journal
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September 2019 |
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change
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journal
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September 2019 |
Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization
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journal
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October 2020 |
Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter
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April 2018 |
Biological mechanisms may contribute to soil carbon saturation patterns
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March 2021 |
Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls
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journal
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November 2016 |
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics
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January 2010 |
Pyrosequencing enumerates and contrasts soil microbial diversity
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July 2007 |
Let the concept of trait be functional!
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May 2007 |
Managing uncertainty in soil carbon feedbacks to climate change
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July 2016 |
Interaction between tannins and fungal necromass stabilizes fungal residues in boreal forest soils
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journal
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February 2019 |
Nitrogen-rich microbial products provide new organo-mineral associations for the stabilization of soil organic matter
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journal
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December 2017 |
Distribution with depth of protozoa, bacteria and fungi in soil profiles from three Danish forest sites
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April 2001 |
Evidence for large microbial-mediated losses of soil carbon under anthropogenic warming
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journal
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June 2021 |
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
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journal
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February 2021 |
Bacterial impact on the wetting properties of soil minerals
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September 2014 |
Soil Candidate Phyla Radiation Bacteria Encode Components of Aerobic Metabolism and Co-occur with Nanoarchaea in the Rare Biosphere of Rhizosphere Grassland Communities
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journal
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August 2021 |
Making the Most of Trait-Based Approaches for Microbial Ecology
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October 2019 |
Microbial dormancy improves development and experimental validation of ecosystem model
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July 2014 |
The mineralosphere—interactive zone of microbial colonization and carbon use in grassland soils
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journal
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March 2021 |
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
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November 2013 |
A Theory of Effective Microbial Substrate Affinity Parameters in Variably Saturated Soils and an Example Application to Aerobic Soil Heterotrophic Respiration
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journal
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April 2019 |
Microbial community-level regulation explains soil carbon responses to long-term litter manipulations
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journal
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October 2017 |
Sticky dead microbes: Rapid abiotic retention of microbial necromass in soil
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journal
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October 2020 |
Microbial community dynamics alleviate stoichiometric constraints during litter decay
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journal
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March 2014 |
Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model
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journal
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May 2021 |
Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
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journal
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September 2017 |
Microbial seed banks: the ecological and evolutionary implications of dormancy
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journal
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January 2011 |
Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?
|
journal
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September 2015 |
Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches
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journal
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April 2021 |
Applying population and community ecology theory to advance understanding of belowground biogeochemistry
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journal
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January 2017 |
Plant- or microbial-derived? A review on the molecular composition of stabilized soil organic matter
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journal
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May 2021 |
Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition
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journal
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December 2013 |
Greatest soil microbial diversity found in micro-habitats
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journal
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March 2018 |
Bacterial mortality and the fate of bacterial production
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journal
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March 1988 |
Microbial community assembly differs across minerals in a rhizosphere microcosm
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journal
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September 2018 |
The global soil community and its influence on biogeochemistry
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journal
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August 2019 |
The Trophic-Dynamic Aspect of Ecology
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journal
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October 1942 |
DRAM for distilling microbial metabolism to automate the curation of microbiome function
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journal
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August 2020 |
A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils
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journal
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June 2014 |
A Theoretical Model of Litter Decay and Microbial Interaction
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journal
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May 2006 |
Competitive Traits Are More Important than Stress-Tolerance Traits in a Cadmium-Contaminated Rhizosphere: A Role for Trait Theory in Microbial Ecology
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journal
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February 2018 |
Host-linked soil viral ecology along a permafrost thaw gradient
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journal
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July 2018 |
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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journal
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January 2019 |
Soil water availability strongly alters the community composition of soil protists
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journal
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November 2014 |
The ratio of Gram-positive to Gram-negative bacterial PLFA markers as an indicator of carbon availability in organic soils
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journal
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January 2019 |
Evolutionary tradeoffs in cellular composition across diverse bacteria
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journal
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April 2016 |
Microbially Derived Inputs to Soil Organic Matter: Are Current Estimates Too Low?
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journal
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December 2007 |
Methane-derived carbon flows into host–virus networks at different trophic levels in soil
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journal
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August 2021 |
Dynamic interactions at the mineral–organic matter interface
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journal
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May 2021 |
Active microorganisms in soil: Critical review of estimation criteria and approaches
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journal
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December 2013 |
Rhizosphere Carbon Turnover from Cradle to Grave: The Role of Microbe–Plant Interactions
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book
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August 2020 |
Multiple mechanisms drive phage infection efficiency in nearly identical hosts
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journal
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March 2018 |
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
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journal
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March 2021 |
Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models
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journal
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July 2018 |
Belowground biodiversity and ecosystem functioning
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journal
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November 2014 |
Microbial Stress-Response Physiology and its Implications for Ecosystem Function
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journal
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June 2007 |
Microbial eco-physiological indicators to asses soil quality
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journal
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September 2003 |
Microbial hotspots and hot moments in soil: Concept & review
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journal
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April 2015 |
Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm
|
journal
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October 2013 |
Quantitative Microbial Ecology through Stable Isotope Probing
|
journal
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August 2015 |
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
|
journal
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November 2019 |
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
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journal
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June 2014 |
Trait dimensions in bacteria and archaea compared to vascular plants
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journal
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April 2021 |
Habitat geometry in artificial microstructure affects bacterial and fungal growth, interactions, and substrate degradation
|
journal
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October 2021 |
Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
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journal
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October 2019 |
Probing the active fraction of soil microbiomes using BONCAT-FACS
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journal
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June 2019 |
Prevalence of Lysogeny among Soil Bacteria and Presence of 16S rRNA and trzN Genes in Viral-Community DNA
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journal
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November 2007 |
Divergent accumulation of microbial necromass and plant lignin components in grassland soils
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journal
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August 2018 |
Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms
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journal
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November 2020 |
Social dynamics within decomposer communities lead to nitrogen retention and organic matter build-up in soils
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journal
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December 2015 |
Phage-specific metabolic reprogramming of virocells
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journal
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January 2020 |
Fungal and bacterial growth in soil with plant materials of different C/N ratios: Fungal and bacterial growth with plant materials in soil
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journal
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December 2007 |
A synthesis of bacterial and archaeal phenotypic trait data
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journal
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June 2020 |
Measurement of bacterial replication rates in microbial communities
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journal
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November 2016 |
A coupled microscopy approach to assess the nano-landscape of weathering
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journal
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March 2019 |
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
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journal
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December 2016 |
Transport, retention, and release of Escherichia coli and Rhodococcus erythropolis through dry natural soils as affected by water repellency
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journal
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December 2019 |
Structure and function of the global topsoil microbiome
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journal
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August 2018 |
Compound‐specific13C stable isotope probing confirms synthesis of polyhydroxybutyrate by soil bacteria
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journal
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March 2019 |
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon
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journal
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July 2018 |
Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes
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journal
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November 2018 |
Functional convergence in the decomposition of fungal necromass in soil and wood
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journal
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December 2019 |
Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust
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journal
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December 2019 |
Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses
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journal
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January 2013 |
Microbe–mineral interactions: The impact of surface attachment on mineral weathering and element selectivity by microorganisms
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journal
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May 2015 |
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
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journal
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November 2015 |
Microbial Growth and Carbon Use Efficiency in the Rhizosphere and Root-Free Soil
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journal
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April 2014 |
SOM genesis: microbial biomass as a significant source
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journal
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October 2011 |
Ectomycorrhizal fungi slow soil carbon cycling
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journal
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June 2016 |
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
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journal
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June 2016 |
Synergies between mycorrhizal fungi and soil microbial communities increase plant nitrogen acquisition
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journal
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June 2019 |
The Functional Significance of Bacterial Predators
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journal
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April 2021 |
Soil microbiomes and climate change
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journal
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October 2019 |
Interactive effects of multiple climate change factors on ammonia oxidizers and denitrifiers in a temperate steppe
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journal
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March 2017 |
Transcriptomic markers of fungal growth, respiration and carbon-use efficiency
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journal
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August 2021 |
Spatial Ecology of Bacteria at the Microscale in Soil
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journal
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January 2014 |
Multiple elements of soil biodiversity drive ecosystem functions across biomes
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journal
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February 2020 |
Quantitative assessment of microbial necromass contribution to soil organic matter
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journal
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August 2019 |
Characteristic Sizes of Life in the Oceans, from Bacteria to Whales
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journal
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January 2016 |
Improved model simulation of soil carbon cycling by representing the microbially derived organic carbon pool
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journal
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February 2021 |
Clay- or sand-polysaccharide associations as models for the interface between micro-organisms and soil: water related properties and microstructure
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journal
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March 1993 |
Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen
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journal
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January 1985 |
Direct measurement of the in situ decomposition of microbial-derived soil organic matter
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journal
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February 2020 |
Biophysical processes supporting the diversity of microbial life in soil
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journal
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August 2017 |
The Use of Neutral Lipid Fatty Acids to Indicate the Physiological Conditions of Soil Fungi
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journal
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June 2003 |
Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere
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journal
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August 2016 |
The ecology of heterogeneity: soil bacterial communities and C dynamics
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journal
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March 2020 |
Increased microbial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity
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journal
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August 2019 |
Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review
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journal
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June 2007 |
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
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journal
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February 2013 |
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
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journal
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September 2016 |
Microbial carbon use efficiency predicted from genome-scale metabolic models
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journal
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August 2019 |
Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2
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journal
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June 2010 |
Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter
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journal
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February 2016 |
Resilience vs. historical contingency in microbial responses to environmental change
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journal
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May 2015 |
Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
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journal
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May 2019 |
Niche differentiation is spatially and temporally regulated in the rhizosphere
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journal
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January 2020 |
Assessing microbial residues in soil as a potential carbon sink and moderator of carbon use efficiency
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journal
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November 2020 |
Microbial formation of stable soil carbon is more efficient from belowground than aboveground input
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journal
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November 2018 |
Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop
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journal
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April 2021 |
Networks of power and influence: the role of mycorrhizal mycelium in controlling plant communities and agroecosystem functioning
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journal
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August 2004 |
Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil
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journal
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October 2021 |
In and out: an analysis of epibiotic vs periplasmic bacterial predators
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journal
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October 2013 |
Integrating microbial physiology and physio-chemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model
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journal
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January 2014 |
Bacterial colonization of minerals in grassland soils is selective and highly dynamic
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journal
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August 2019 |
Hidden diversity of soil giant viruses
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journal
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November 2018 |
Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles
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journal
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January 2015 |
Trophic Regulations of the Soil Microbiome
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journal
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September 2019 |
Microbial community dynamics in soil aggregates shape biogeochemical gas fluxes from soil profiles - upscaling an aggregate biophysical model
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journal
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June 2016 |
Microbial physiology and necromass regulate agricultural soil carbon accumulation
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journal
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December 2015 |
Cellular and extracellular C contributions to respiration after wetting dry soil
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journal
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February 2020 |
Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation
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journal
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November 2014 |
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
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journal
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September 2018 |
Low Pore Connectivity Increases Bacterial Diversity in Soil
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journal
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April 2010 |
Ecological and soil hydraulic implications of microbial responses to stress – A modeling analysis
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journal
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June 2018 |
Rice rhizodeposition promotes the build-up of organic carbon in soil via fungal necromass
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journal
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September 2021 |
Unraveling Mechanisms behind Biomass–Clay Interactions Using Comprehensive Multiphase Nuclear Magnetic Resonance (NMR) Spectroscopy
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journal
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November 2020 |
Visualizing the transfer of organic matter from decaying plant residues to soil mineral surfaces controlled by microorganisms
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journal
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September 2021 |
Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons
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journal
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August 2015 |
Modeling adaptation of carbon use efficiency in microbial communities
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journal
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October 2014 |