The RCSB Protein Data Bank: new resources for research and education

Rose, Peter W.; Bi, Chunxiao; Bluhm, Wolfgang F.; Christie, Cole H.; Dimitropoulos, Dimitris; Dutta, Shuchismita; Green, Rachel K.; Goodsell, David S.; Prlić, Andreas; Quesada, Martha; Quinn, Gregory B.; Ramos, Alexander G.; Westbrook, John D.; Young, Jasmine; Zardecki, Christine; Berman, Helen M.; Bourne, Philip E.

doi:10.1093/nar/gks1200

The RCSB Protein Data Bank: new resources for research and education

Journal Article · Sun Nov 25 23:00:00 EST 2012 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gks1200· OSTI ID:1904020

Rose, Peter W. ^[1]; Bi, Chunxiao ^[2]; Bluhm, Wolfgang F. ^[2]; Christie, Cole H. ^[2]; Dimitropoulos, Dimitris ^[2]; Dutta, Shuchismita ^[3]; Green, Rachel K. ^[3]; Goodsell, David S. ^[4]; Prlić, Andreas ^[2]; Quesada, Martha ^[3]; Quinn, Gregory B. ^[2]; Ramos, Alexander G. ^[2]; Westbrook, John D. ^[3]; Young, Jasmine ^[3]; Zardecki, Christine ^[3]; Berman, Helen M. ^[3]; Bourne, Philip E. ^[2]

University of California San Diego, La Jolla, CA (United States). Supercomputer Center; OSTI
University of California San Diego, La Jolla, CA (United States). Supercomputer Center
Rutgers University, Piscataway, NJ (United States)
The Scripps Research Institute, La Jolla, CA (United States)

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) develops tools and resources that provide a structural view of biology for research and education. The RCSB PDB web site (http://www.rcsb.org) uses the curated 3D macromolecular data contained in the PDB archive to offer unique methods to access, report and visualize data. Recent activities have focused on improving methods for simple and complex searches of PDB data, creating specialized access to chemical component data and providing domain-based structural alignments. New educational resources are offered at the PDB-101 educational view of the main web site such as Author Profiles that display a researcher’s PDB entries in a timeline. To promote different kinds of access to the RCSB PDB, Web Services have been expanded, and an RCSB PDB Mobile application for the iPhone/iPad has been released. These improvements enable new opportunities for analyzing and understanding structure data.

View Accepted Manuscript (DOE)

Research Organization:: University of California San Diego, La Jolla, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC); National Science Foundation (NSF); National Institute of General Medical Sciences (NIGMS); National Library of Medicine (NLM); National Cancer Institute (NCI); National Institute of Neurological Disorders and Stroke (NINDS); National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)

OSTI ID:: 1904020

Journal Information:: Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: D1 Vol. 41; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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Structure-Based, Rational Design of T Cell Receptors Zoete, V.; Irving, M.; Ferber, M. Frontiers in Immunology, Vol. 4 https://doi.org/10.3389/fimmu.2013.00268	journal	January 2013
Molecular and Structural Characterization of the Tegumental 20.6-kDa Protein in Clonorchis sinensis as a Potential Druggable Target Kim, Yu-Jung; Yoo, Won; Lee, Myoung-Ro International Journal of Molecular Sciences, Vol. 18, Issue 3 https://doi.org/10.3390/ijms18030557	journal	March 2017
Computer-Aided Discovery of Small Molecule Inhibitors of Thymocyte Selection-Associated High Mobility Group Box Protein (TOX) as Potential Therapeutics for Cutaneous T-Cell Lymphomas Agrawal, Vibudh; Su, Mingwan; Huang, Yuanshen Molecules, Vol. 24, Issue 19 https://doi.org/10.3390/molecules24193459	journal	September 2019
Virtual Screening of FDA-Approved Drugs against LasR of Pseudomonas aeruginosa for Antibiofilm Potential Sadiq, Suhaib; Rana, Nosheen Fatima; Zahid, Muhammad Ammar Molecules, Vol. 25, Issue 16 https://doi.org/10.3390/molecules25163723	journal	August 2020
Additional file 1 of Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer’s Disease drug candidate Nemergut, Michal; Marques, Sérgio M.; Uhrik, Lukas figshare https://doi.org/10.6084/m9.figshare.23304964.v1	audiovisual	January 2023
PDB-Explorer: a web-based interactive map of the protein data bank in shape space Patiny, Luc; Reymond, Jean-Louis; Awale, Mahendra BioMed Central https://doi.org/10.7892/boris.74705	text	January 2015

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