Temporal Study 2021-2022: Sample-Based Surface Water Chemistry and Organic Matter Characterization across Watersheds in the Yakima River Basin, Washington, USA (v3)
- Pacific Northwest National Laboratory; Pacific Northwest National Laboratory
- Pacific Northwest National Laboratory
- Colorado State University
This dataset supports a broader study examining the drivers of temporal variability in sediment respiration rates in the Yakima River Basin. The dataset provides geochemistry and organic matter characterization data generated from samples collected at weekly or bi-weekly intervals at six sites across the Yakima River Basin in Washington, USA. Related sensor data will be published separately and can be used to link sediment respiration rates to biogeochemical processing rates.The data package was originally published in November 2022. It was updated in November 2023 (v2; modified files) and April 2025 (new and modified files). See the change history section in readme for more details. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) dissolved inorganic carbon (DIC), dissolved organic carbon (DOC; reported as non-purgeable organic carbon; NPOC), total nitrogen (TN), total suspended solids (TSS), and ions; (5) averaged values from water chemistry data; (6) surface water sampling protocol; (7) sensor protocol; (8) readme; (9) methods codes; (10) international generic sample number (IGSN) mapping file; and (11) folder of high resolution characterization of organic via 12 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory). This folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml.We acknowledge the Yakama Nation as owners and caretakers of the lands where we collected our data. We thank the Confederated Tribes and Bands of the Yakama Nation Tribal Council and Yakama Nation Fisheries for working with us to facilitate sample collection and optimization of data usage according to their values and worldview.
- Research Organization:
- Environmental System Science Data Infrastructure for a Virtual Ecosystem; River Corridor and Watershed Biogeochemistry SFA
- Sponsoring Organization:
- U.S. DOE > Office of Science > Biological and Environmental Research (BER)
- DOE Contract Number:
- AC02-05CH11231
- OSTI ID:
- 1898912
- Country of Publication:
- United States
- Language:
- English
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Ammonium
Biogeochemistry
Bromide
Calcium
Canopy cover
Chloride
DIC
Dissolved Inorganic Carbon
EARTH SCIENCE > BIOSPHERE > VEGETATION > MACROPHYTES
EARTH SCIENCE > BIOSPHERE > VEGETATION > VEGETATION COVER
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE WATER
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > NUTRIENTS > NITROGEN COMPOUNDS
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > SOLIDS > SUSPENDED SOLIDS
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > NITROGEN COMPOUNDS
EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > WATER CHARACTERISTICS > WATER ION CONCENTRATIONS
ESS-DIVE CSV File Formatting Guidelines Reporting Format
ESS-DIVE File Level Metadata Reporting Format
ESS-DIVE Location Metadata Reporting Format
ESS-DIVE Sample ID and Metadata Reporting Format
ESS-DIVE Water-Soil-Sediment Chemistry Reporting Format
FTICR-MS
Fluoride
Freshwater
Hydrobiogeochemical function
Lithium
Macrophyte cover
Magnesium
Mass spectrometry
Metabolite
Metabolomics
Microbiology
NPOC
Nitrate
Nitrite
Non-purgeable organic carbon
Organic matter
Phosphate
Potassium
River
River corridor
Sodium
Stream
Stream metabolism
Sulfate
TN
TSS
Total Suspended Solids
Total nitrogen
Watershed