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Perspective: Biochemical and Physical Constraints Associated With Preparing Thin Specimens for Single-Particle Cryo-EM

Journal Article · · Frontiers in Molecular Biosciences
 [1];  [2];  [3];  [1]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Berkeley, CA (United States)
  3. Univ. of California, Berkeley, CA (United States); Chan Zuckerberg Biohub, San Francisco, CA (United States)
While many aspects of single-particle electron cryo-microscopy (cryo-EM) of biological macromolecules have reached a sophisticated level of development, this is not yet the case when it comes to preparing thin samples on specimen grids. As a result, there currently is considerable interest in achieving better control of both the sample thickness and the amount of area that is useful, but this is only one aspect in which improvement is needed. This Perspective addresses the further need to prevent the macromolecular particles from making contact with the air-water interface, something that can result in preferential orientation and even structural disruption of macromolecular particles. This unwanted contact can occur either as the result of free diffusion of particles during the interval between application, thinning and vitrification of the remaining buffer, or—when particles have been immobilized—by the film of buffer becoming too thin prior to vitrification. An opportunity now exists to apply theoretical and practical insights from the fields of thin-film physical chemistry and interfacial science, in an effort to bring cryo-EM sample preparation to a level of sophistication that is comparable to that of current data collection and analysis.
Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
National Institutes of Health (NIH); USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1895336
Journal Information:
Frontiers in Molecular Biosciences, Journal Name: Frontiers in Molecular Biosciences Vol. 9; ISSN 2296-889X
Publisher:
Frontiers Media S.A.Copyright Statement
Country of Publication:
United States
Language:
English

References (49)

The fatty acid monolayer technique for preparing frozen-hydrated specimens journal January 1985
Thin liquid films journal December 1967
A theory and method for the spreading of protein monolayers journal February 1960
Factors that Influence the Formation and Stability of Thin, Cryo-EM Specimens journal February 2016
Microscale Fluid Behavior during Cryo-EM Sample Blotting journal February 2020
Hydration forces: Observations, explanations, expectations, questions journal December 2011
Thin liquid films: Where hydrodynamics, capillarity, surface stresses and intermolecular forces meet journal June 2021
Strategy for the Use of Affinity Grids to Prepare Non-His-Tagged Macromolecular Complexes for Single-Particle Electron Microscopy journal July 2010
On the freezing and identification of lipid monolayer 2-D arrays for cryoelectron microscopy journal December 2007
Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future journal September 2008
Chemically functionalized carbon films for single molecule imaging journal March 2014
Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts journal March 2017
Monolayer-crystal streptavidin support films provide an internal standard of cryo-EM image quality journal December 2017
Optimizing “self-wicking” nanowire grids journal May 2018
Routine determination of ice thickness for cryo-EM grids journal October 2018
3.1 Å structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids journal September 2019
Simple assay for adsorption of proteins to the air–water interface journal December 2021
Need for Speed: Examining Protein Behavior during CryoEM Grid Preparation at Different Timescales journal November 2020
Antibody-based affinity cryo-EM grid journal May 2016
Projected structure of the pore-forming OmpC protein from Escherichia coli outer membrane journal May 1985
Evaluation of DLVO theory with disjoining-pressure and film-conductance measurements of common-black films stabilized with sodium dodecyl sulfate journal June 2003
Electron microscopy of frozen hydrated biological specimens journal June 1976
Single particle electron cryomicroscopy: trends, issues and future perspective journal January 2016
Cryo-electron microscopy of vitrified specimens journal May 1988
Nonfouling NTA-PEG-Based TEM Grid Coatings for Selective Capture of Histidine-Tagged Protein Targets from Cell Lysates journal January 2016
Soap Films and Some Problems in Surface and Colloid Chemistry1 journal December 1964
Bioactive Functionalized Monolayer Graphene for High-Resolution Cryo-Electron Microscopy journal February 2019
Equilibrium measurements of oscillatory disjoining pressures in aqueous foam films journal December 1992
Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy journal September 2017
Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution journal June 2019
Cryo-EM structures from sub-nl volumes using pin-printing and jet vitrification journal May 2020
Understanding the invisible hands of sample preparation for cryo-EM journal May 2021
Microfluidic thin film pressure balance for the study of complex thin films journal January 2021
Spontaneous rupture of thin liquid films journal January 1974
Hydrophilic Support Films of Controlled Thickness and Composition journal October 1973
Multifunctional graphene supports for electron cryomicroscopy journal May 2019
General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM journal September 2020
Molecular orientation of bacteriorhodopsin within the purple membrane of Halobacterium halobium. journal September 1978
Disjoining pressure in thin liquid foam and emulsion films—new concepts and perspectives journal June 2003
The resolution revolution in cryoEM requires high-quality sample preparation: a rapid pipeline to a high-resolution map of yeast fatty acid synthase journal January 2020
Approaches to altering particle distributions in cryo-electron microscopy sample preparation journal May 2018
Phospholipid, Nature's own slide and cover slip for cryo-electron microscopy journal January 1989
Current outcomes when optimizing ‘standard’ sample preparation for single‐particle cryo‐EM journal October 2019
JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications journal January 2021
Preparing Better Samples for Cryo–Electron Microscopy: Biochemical Challenges Do Not End with Isolation and Purification journal June 2021
Interfacial mechanisms for stability of surfactant-laden films journal May 2017
Routine single particle CryoEM sample and grid characterization by tomography journal May 2018
Protein denaturation at the air-water interface and how to prevent it journal April 2019
Nanofluidic chips for cryo-EM structure determination from picoliter sample volumes journal January 2022

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